NONHSAT108707
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108707 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3994 nt |
Genomic location |
chr6-:30942738..30951674 |
Exon number |
2 |
Exons |
30942738..30945589,30950533..30951674 |
Genome context |
|
Sequence |
000001 GCAAAGAACA GAGGATTCTT GAGAAAGGGG ACTTGAAGGT GAAGAGATAA AGGCTGGTGC TTCCAGGAGC GTGGGTCTCC 000080
000081 TACGTTTGTG TTCCTGGGAA GAATCTTGGA CTCAGGCGTG GGCAGCTGGA TGCCTGGGTT CCTTAGGCTT CCTCCAGGCA 000160 000161 ATGTAGTTGC CTCTTTCTCT GTTGTGAAAG AGCTGCAGGG GCCTTTATAG CTTCATATGG TCTGAGGAGG GGTGGGGCAG 000240 000241 TTGACCTGAC AGTCTGCCAA CTACAGGCAG GTGAGAGAAC GATACCAAGC CTGGGACGGA ATAGAGCAGG GGTCAAGAGG 000320 000321 AAGGTGAGAA AGGAGAATGA CATGACCACA CTAGGCAGGG TGCTTGGCTG GGTTGCAGCA GGAAGTAGAA TGGGATGAGG 000400 000401 AGATCATGGT TGTCAGAGTG GAAGGGACCC ACCCTTTGAA GCAGGGATCG GGTTAGAAAC CTGTTGCAGC TCAAGAATTT 000480 000481 GTTTTCTGGT CAGGAAGTCC TGTGGGCCTG CTTTAGCATG AAAGAAGCCC TAATGAACTG AGCCAAGAGA GTAGGACCTC 000560 000561 ACATCTCTAC AGCAAACAGT AATAGGTGAC GCAAAAGAGA CCAGTAACTA GGACTCTGGG CTCCTGGGTT ATGGGCAGAA 000640 000641 GACAAATGGA GTATTACTGA GTATGCAGTA AGCACTCAAC AATGCACATT GAAGGAACAG GGGAAGAGAG ATCCAGAAGA 000720 000721 CATAATGAAG AGAGATAATG AAAACATGTT TGGGGTCTCT GGGGCATGAG AACTGAGGGT GTGGGAGAGT ATTGAATACG 000800 000801 CCCCCTGTCA GACTCATAGC AGGAGAAGGA AGGTAGGGTC TCCTTCTGAC CCTCAACCAT AGGAGCTCCC CTCTGTTTTG 000880 000881 TTTTTGTTTT CAGACGGCTG TATAGGAGCC TTTCCACCCT GAGATCCTTC TGATGTGCCT TAGCATCAGT TCCAAGGAAG 000960 000961 CGTCTCTCAG GAGAGTACAC ACCTTAGGGA GAGACACAGT GCCATATCGG GACACAGTCT GATGGGAGGA GGGAGATCAA 001040 001041 CAGTCCAAGT CCTGGAGGAG GCTTGAATTT GGTCTGGACA CTTGGGTATG GCCAGCAGAG GGGAAACAGT CAGCTAAAAG 001120 001121 AGCGTGACTG AAGAGACCCA AACTTCCTGT GTGTGTGTGT GTGTGGATGA TATTTAGGAC TCTCTTCCTC TTATTTATTT 001200 001201 ATTTATTGGA GAAAACAGTC TTCCTAATTA GTATACTTGT ACCTTGGTAG GGATCTATGC TGCTCAACTT TCAAGACAAG 001280 001281 ATAAGTCTGG GCATGGTGGC TCGTGCCTGT AATCCCAAAA CTTTTGGAGG CTGAGGTAGG TGGATTGCTT GAGCCCAGGC 001360 001361 ATTCCAGAGA CCAGCCTGGG CAACATGGTG AAACCCCATC TCTACAAAAA TAAAAAAAAC AAGACAAGGT AAATTTGCAT 001440 001441 CCTGTACCTG GGAACAGAGT CAGCTAAGAG TAGGGAATCT TTTATTGTGT AAATCAACCA AAAAGGTTGC ATGTCTATGA 001520 001521 GGTCAGGTAA AAATAAATAA AAGTTCATAA GGCCAGGTAC AGTGGCTCAT GCCAGTAATC CTAGTACTTT GGGAGGCCAA 001600 001601 AGCGAGAGGA TCACTTGAAC CCAGCTCTAT CTCTGGGTAG ACAGAAGCTG CAGTGAGCCA AGACGGCACC ACTGGACTCC 001680 001681 AGCCTGGGTG ACAGAGTGAG ACCCCATCCA AAAATTAAAA TGAAAAATTT TTTTTAAAGT TCATAAAATA GAAGCTAGAA 001760 001761 TAGTGCTTAC CTTTGATGGA GTGGGTATTA TCTGGGAAGG GCCACAAAAT AAACTACTCA GATGGTAGAA ATATTCTACA 001840 001841 TTTTAAGTTG GGTAATGGTT GTACAAGTGT TAACACATTT TGAAATTAAT CAAGCTGTAC AAATAATATT TGTGTACTTT 001920 001921 TGTAAATTAT AGTTCAAAAT TTTTTCATCT GTGAACAGTA TTTATTTTTT TCAATTAATA TTGTTCTTTT TATTTTTTTT 002000 002001 TTATTTCTTG AGACAGAGTC TTTCTCTGCT ACCCAGGCTG GAGTGCAGTA GCACGATCTC GGCTCACTGC AACCTCTGCC 002080 002081 TCCCAGGTTC AAGCAATTCT CCTGCCTCAT CCTCCAGAAT AGCTGGGATT ACATGCATAA GCCACCATAC CCGACTAATT 002160 002161 TTTGTATTTT TAGTAGAGAC AGGGTTTCCC CATGTTGGCC AGGCTGGTCT TGAACTCCTT ACCTCAGATG ATCCATCCGC 002240 002241 CTCAGCCTCC CAAAGTGTTG AGGTTACAGA ACTGCGCCCG GCTGTTCTTT TTATTTTTAA GTGTAATTTA ACTTTTAACC 002320 002321 TTTCTCCCAA CTGTATTAAG TTGATACGTG AAACATATAT TTGGACTTCT GCACATTTCC TGGCATGCAG CTCCTAAAAT 002400 002401 CCTTAGGTAC TGAAAAGTGA TTTTTTTTTT TGTATGCGAA TGAGTCAACT GTTGGCTACA GGATGGGGGC TAATCACCGG 002480 002481 AAAGACCAAA GCACCACCCC TTAACCCTTA ACCTCCAGGG AGGAGAGGGG ACTGAAGGTT AAGTTGATTA CCAGTGGCCA 002560 002561 TGGTTTAATC AGGTATACCT ACATAATGAA GCCTCTGTAA AAACCCCAAA GGCCAGGGCT CAGAAAACAT ATGGAGGTTC 002640 002641 CTGGAGGATG GAGTGCTGGG GAGGGCATGG AAGCTCCCTG CTCCTTCTCC CTCCACGCCT CTTCACCTGT ATCCTTTGTA 002720 002721 ATATCCTTTG TAATAAACCA GTAAAGGTGT TTCCCTGAGT TCAGTCAGCC ACTCCTGCAA ATTAATCGAA ACCAAACAGG 002800 002801 AGTAGCCAAC TCCAACTTGC TCCAGTTGGT CAGAAGTTCC AGAGGCCTGG ACTTGGCAGC CTGTGGGAAG GAGCGGTTGG 002880 002881 TGTTGAGGGA CTGCGCGCTT AGTCTGTGGA TCTGATGCTA TCTCCAGGTA GGCAGTGCCA GCACTGAATC GGAGGACACC 002960 002961 GAGCTGGTGT CTGCTGCAGA ACTGATTGCT TGCTTAGTGT GGGAAGAACT TCCCCTCTTA ATTTGGTCAC CAGAAGTGTT 003040 003041 TTGTGTTGGT GGTGGTGTGA GAGCAGAGGA AACACAGTTT GTGTTTTTCC CACTTTCAAA GCTGGTGAAT AAATATTGCA 003120 003121 TATACTTATG GTGTACAATG TGATGTTTTG ATATATGTAT ACATTTTGAA ATTATTAAAT CAAATTAACA TATCTATTGC 003200 003201 CTTGCATACT TATCATTTTT TATTGGTAAG AATTACACCT CAATTTTTAA AGATAAAGAA AAATAAGAGA CAGGCCATAA 003280 003281 AGAGCTAAAG GTTGGAGAAC TATCTAAAAA ACACTGTGGG CCAGGTGCGG TGGTTCACGC CTGTAATCCC AGCACTTTGG 003360 003361 GAGGCCGATG TGGACAGATG ATGAGGTCAG GAGTTCGAGA GCAGCCTGGC CAACATGGTG ACACCCCATC TCTACTAAAA 003440 003441 ATACAAAAAA TTAGCCGGGC ATGGTGGCAC ATGCCTGTAA TCCCAGCTAC TCAGGAGGCT GAGGCAGGAG AATTGCTTGA 003520 003521 ACCCGGGAGG TGGAGGTTGC AGTGAGCCGA GATTGTGCCA TTGCACTCCA GCCTGGGCAA CAGGGTGAGG CTTCGGCTCA 003600 003601 AAAAAACAAA CAAACACTCT GGCTAAGAAC ACAGGCTCTG CTGTCAAGCG GACCAGAATT AGAGCCTAGC TCTGCGTGGC 003680 003681 CTTGTCCTGT GGTCTTCAGC AAGTTACTTA TGTCTCTGCT TCCAGTTTTC TAGTCTATAA AATGGGATAA TAGGAGTACG 003760 003761 CATCCCCAAG GGTGGTTGAG CAGAGCAAAG GAGAGATGAT GCCCTCTAAG CACTCTGGGC CCTGGACCTC ATACCTAGTA 003840 003841 GATAGCTAAT AAAATGCTAG TTAACTAATA TTACATCTTT ATCTTAAACA TTTAGGGGGT TGCTCATGGC TGGTGAGTCA 003920 003921 CATATTGTTC TTCCCTTAGG GAGGGGTCAG AGACTCTGAA ATAAGAAACT CAGGTAAGTT GATTGTAAAT TATG |
Predicted Small Protein
Name | NONHSAT108707_smProtein_3377:3544 |
Length | 56 |
Molecular weight | 6305.1947 |
Aromaticity | 0.0545454545455 |
Instability index | 60.0490909091 |
Isoelectric point | 8.38250732422 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.0485149014562 |
Amino acid sequence | MMRSGVREQPGQHGDTPSLLKIQKISRAWWHMPVIPATQEAEAGELLEPGRWRLQ |
Secondary structure | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHLLLLLEELL |
PRMN | - |
PiMo | - |