NONHSAT112108
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112108 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4094 nt |
Genomic location |
chr6-:33972186..33978388 |
Exon number |
2 |
Exons |
33972186..33974322,33976432..33978388 |
Genome context |
|
Sequence |
000001 tgcacgcagc aggaggagtt ggaggtgggg ctgggatttg aacccaggcg gtctggctcc agtcctcacc cttagcctct 000080
000081 actccacact gCCTCCCTAA GACACTCTGG TTGGTCTCTG CCTCCACCAT TCATTTCTCC ATTCAATTGT GTTTCAAGCA 000160 000161 CTACTGTGAG CCCAGATATA CTGCAGTTCT TGGAGACATG GAGCAACTAG CTTGAAGAAA CAATTATAAA ATATGGGGAA 000240 000241 GAAGAGAGTG GCTACACACA CCAGCAGCTC AGAAAAGGGT CTCTGAGTCA gcttcctgaa ggagttaaca cctgagctta 000320 000321 tccctaaagg tccatctggt ggaatggaga cagggaaggg atttcagaga tgagcaaagg acagagatga tcaacagcgt 000400 000401 atttgggaag agaggcccag tagagatact gggaagacca agatgagcac tccaggggtg acagatgagg ctgaagaggc 000480 000481 gggcaaaggc aagGGGAGGG GGCCTGTGGG CTACACCCAG TGGCCTGGAC TTTCTTCTAA GAAGGGAGTG ACCTAGGTGG 000560 000561 AGCTGTGAAT TTGGACAACC TCTCTGTGGG TGGTGGGTTG GAAGGGTCTG GCCTGGAGGC TGGGAGACCT GTTACGAGGC 000640 000641 CATTGCTATG GGCCTGGTGA GAGATGAGGG CCTGGGGACG AGGGACTCGG TTGGATGCAG AAGATAACTG AGCAGATGGA 000720 000721 GTGGGGCAAT GCTGGCATGG ATGACTGGAT GGTGGAGCTG CCAGAAGGGG AGAGTGAAGA CTTGTGcttc taggtgatat 000800 000801 ctttaaaagg aatgggcatg tactcctttc aaccctttcc tctcccctcc tgctggaatg cagatgtgat ggcaggagtg 000880 000881 ggagtagcca ccttgaactc agagactgaa gtcaagttta agggatggca gagcTGCACT GTAGCCTGGA AGTACCAAGC 000960 000961 TCTGGGCCAt tgtgtgtgga agaactcaag ttcttactgg tttaagccat tctattttgg agtgtctgta agagcagctt 001040 001041 agcatctact tgaactaatg caCCTACATG CCACTGATGC ACCAGTGGCA TGCTGGTGCA CACTGCATGC ACCAGTGTTG 001120 001121 AGCTTTGTGT AGGCTAATCC CTGTGCCAGG GATGCCATCC CTTCTGGTAC CTCCACCTCT ACCTGCTTGG ACAACGGGCA 001200 001201 CCATTAAGTC AAGATTggtg gctcaagact gtagtcctag ctactcagga ggtcgaggca ggaggattgc ttgaggccaa 001280 001281 gagtctgaga ccagcctgga caatatagtg agaccttgtc tttaaaataa caacaataaT ATTTTTTGAA AAAAGATTCT 001360 001361 ACTTTGGCAT TCCCTCTTCC AAGAatagtc cttctgctgt acctccacta cactacattt tattgtgctt tcttggctat 001440 001441 ttctgcatcc cagaccataa gcttcttggg ggccatatct tatttctgct tgtggggtca gtgccttcct ctcctaggga 001520 001521 ctcaatatgt gttggttgaa tgGTTCTGAG CAGTGGGTGC AGACAGCATG tcacagggtt gctggaagaa ttaaatgagt 001600 001601 gcagtgttat ttgtcatgtg gtctgggtta tgctgtgtga cagtcagaaa ttctcagtgg cttaaaagca caagattgtt 001680 001681 tttcctcact cacactatct atccggggag gggggtctgc tcattatagt gactcgggga ttgcagatga cgcaggctcc 001760 001761 tccaatcttc atgcgaggct tccctggcag gggaagagaa tatggagaac tgcacgctgg ctcttcgtgc ttccacctga 001840 001841 aagcagcaca tgttctttct ctcatatttc attgtcaaag caagtcctgc agccacacct caagaggggt gaggatatgt 001920 001921 aatcctattg cctagaagag gagaactgga gctattgGTG GGGCCCTTTA GTTCCACACA AGCAAGCCAG AGCCCACCCC 002000 002001 CATTTGTTTG CAGAGGAAAC TGAAAAGTCA TCCACCACAA ATTGGAATGC AGATGCTGCA GTTTGCCGCG TCGAGTGTGC 002080 002081 TGTTTAGTCA TGTAAATTGG GAGCGTCTCT ATCCCGGCTG TGCCCTTGAA GCATTAGGGA AATGCTTTTC TCTAAATGCA 002160 002161 CATTTAGACT GAACTGTGGC TGTCCCAACA TGGTGTCACT TTGATGTTGA ACAACCAGAC TCTGGAGATG TATTTTACAG 002240 002241 TTATTATGAT TGCCTTGCCT AGTCCCAGAG GCAGTCCtca ttcattcatt cattcgttca atcatccatt tattcattca 002320 002321 ACAAGTCAGT ACTGAGCACG TTGTGTGGCC CAGAGTGAAC CAGGCTGACA CAGACTCTGC AGGAAGCAAT GAGTATTCCT 002400 002401 GCTGCAGGCA TCGCTTGGGT CTAGAGCCAT GAGTAGGGAG GGGGGTGCAG GAGAGGACAG CCTGAGGCTG TGAGCCAGGG 002480 002481 AGGTGAAGAG ACCTGGAGAT CTGGAGAGGC AGGAAGTTGT GGAATCAGGC CTTGGCTTCA TGGAATCTGG CAGGGGCCAC 002560 002561 AAGGAGGGTG GGATTTGTGG GTTTGTGAGC CTCAAGAGCA ACTGCTGCTG GCAGGCAGGT CACACACTCT CAGGACCCTG 002640 002641 CTGATTGTCT CCCAAACCTT CAGTAGCACA TGCTCTGGGC TTCCAGCTGC ACACTGGTGC AGGGAGAGGG GGTGAAATAA 002720 002721 AAAAGGTGGT TACCAGGCAG AGAGAGGCGA GCTGGAGCAG TAAACATTAG AGAGAAGGAT GCAGGCACGA GGGACAGtgg 002800 002801 atgccttgag gaatcgccat ccacagaaca cccagaagtg ctccacaaaa tgaaacaacc attctttttc aatacatggc 002880 002881 tgggtttgta aaatgaatga atgaatacaa ggaaaacctt cagggtgtca aacataaaga gggtgctgga agcctgagtg 002960 002961 taggggactc tgaagctgtt gggaggcctc aggtggtttg cagatcatgc ttctccaaga accagatcca ggtttcccaa 003040 003041 cagcagcatg atgggcactt tgggcctgat tattctttgt tgtgaggggc tgtcccatgc attgtaggat gtctagcagc 003120 003121 acccctggcc tcacccacca gatgcccgta gcactttcct cctctagtgt gacaatcaga aatgttgcca gactttgcca 003200 003201 aatgtctcct gggggacaaa atcgtccagg tggagaacca caggcctaga ggcttggttg taaagggccc cacaaggaag 003280 003281 aagggctgtg ggcccagggc agtgggcagt tgtaattgag agctccacaa aaaaactaag actttcaaaa gtctacactt 003360 003361 tttgtggaag gatagagaaa aacatccatt cggtggcaaa gagaaatgat aagaacattt gtctattttg gcatgtgctc 003440 003441 tttgtaggaa aaaataaaag ccttctttaa attttgtaat cacaagcctg accacacagg ggtataggta aatgtttgcg 003520 003521 ttatgtgtgt tccaggaaat gccaggtggt ggaactaact ccaagtgtgt tagtagcacc tagccacctg gctggcagaa 003600 003601 gcaaaagcaa attctcttgg gagggacaca ccttcaactt ttgctgtaca agattcccat ggatagagac cagctaagct 003680 003681 caagtttaca atacagaatt acaaagcata cagggaaaca actgatcaca aggaagtcag taaaaaccac aaatggcaga 003760 003761 agtagacctt caagacttaa gatattggaa taatcagatc cagagtatat atatgtatat gtgtgtgtgt gtgtatttta 003840 003841 gagacaaggt ctccatctgt cacccagggt ggagtgcaat gatgatgtga tcttggctca ctgaagcctc taccttctgg 003920 003921 gttcaagtga tcctcttacc tcagcttcct gagcagctag gatgacaggc tcacatcact gtgcttggct gggttttttt 004000 004001 tttctttttt tgtagagaca aggtctcact atgtctcatt atgttggtgg tctcaaactc atgacctcaa gtgatcctcc 004080 004081 cacctcagcc tccc |
Predicted Small Protein
Name | NONHSAT112108_smProtein_3752:3889 |
Length | 46 |
Molecular weight | 5471.4246 |
Aromaticity | 0.155555555556 |
Instability index | 55.8933333333 |
Isoelectric point | 5.40985107422 |
Runs | 8 |
Runs residual | 0.0155303030303 |
Runs probability | 0.0353073661898 |
Amino acid sequence | MAEVDLQDLRYWNNQIQSIYMYMCVCVYFRDKVSICHPGWSAMMM |
Secondary structure | LLLLLHHHHHHHHHHHHHHHEEEEEEEEEELLEEEELLLLLLEEL |
PRMN | - |
PiMo | - |