NONHSAT112108

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT112108

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4094 nt

Genomic location

chr6-:33972186..33978388

Exon number

2

Exons

33972186..33974322,33976432..33978388

Genome context

Sequence
000001 tgcacgcagc aggaggagtt ggaggtgggg ctgggatttg aacccaggcg gtctggctcc agtcctcacc cttagcctct 000080
000081 actccacact gCCTCCCTAA GACACTCTGG TTGGTCTCTG CCTCCACCAT TCATTTCTCC ATTCAATTGT GTTTCAAGCA 000160
000161 CTACTGTGAG CCCAGATATA CTGCAGTTCT TGGAGACATG GAGCAACTAG CTTGAAGAAA CAATTATAAA ATATGGGGAA 000240
000241 GAAGAGAGTG GCTACACACA CCAGCAGCTC AGAAAAGGGT CTCTGAGTCA gcttcctgaa ggagttaaca cctgagctta 000320
000321 tccctaaagg tccatctggt ggaatggaga cagggaaggg atttcagaga tgagcaaagg acagagatga tcaacagcgt 000400
000401 atttgggaag agaggcccag tagagatact gggaagacca agatgagcac tccaggggtg acagatgagg ctgaagaggc 000480
000481 gggcaaaggc aagGGGAGGG GGCCTGTGGG CTACACCCAG TGGCCTGGAC TTTCTTCTAA GAAGGGAGTG ACCTAGGTGG 000560
000561 AGCTGTGAAT TTGGACAACC TCTCTGTGGG TGGTGGGTTG GAAGGGTCTG GCCTGGAGGC TGGGAGACCT GTTACGAGGC 000640
000641 CATTGCTATG GGCCTGGTGA GAGATGAGGG CCTGGGGACG AGGGACTCGG TTGGATGCAG AAGATAACTG AGCAGATGGA 000720
000721 GTGGGGCAAT GCTGGCATGG ATGACTGGAT GGTGGAGCTG CCAGAAGGGG AGAGTGAAGA CTTGTGcttc taggtgatat 000800
000801 ctttaaaagg aatgggcatg tactcctttc aaccctttcc tctcccctcc tgctggaatg cagatgtgat ggcaggagtg 000880
000881 ggagtagcca ccttgaactc agagactgaa gtcaagttta agggatggca gagcTGCACT GTAGCCTGGA AGTACCAAGC 000960
000961 TCTGGGCCAt tgtgtgtgga agaactcaag ttcttactgg tttaagccat tctattttgg agtgtctgta agagcagctt 001040
001041 agcatctact tgaactaatg caCCTACATG CCACTGATGC ACCAGTGGCA TGCTGGTGCA CACTGCATGC ACCAGTGTTG 001120
001121 AGCTTTGTGT AGGCTAATCC CTGTGCCAGG GATGCCATCC CTTCTGGTAC CTCCACCTCT ACCTGCTTGG ACAACGGGCA 001200
001201 CCATTAAGTC AAGATTggtg gctcaagact gtagtcctag ctactcagga ggtcgaggca ggaggattgc ttgaggccaa 001280
001281 gagtctgaga ccagcctgga caatatagtg agaccttgtc tttaaaataa caacaataaT ATTTTTTGAA AAAAGATTCT 001360
001361 ACTTTGGCAT TCCCTCTTCC AAGAatagtc cttctgctgt acctccacta cactacattt tattgtgctt tcttggctat 001440
001441 ttctgcatcc cagaccataa gcttcttggg ggccatatct tatttctgct tgtggggtca gtgccttcct ctcctaggga 001520
001521 ctcaatatgt gttggttgaa tgGTTCTGAG CAGTGGGTGC AGACAGCATG tcacagggtt gctggaagaa ttaaatgagt 001600
001601 gcagtgttat ttgtcatgtg gtctgggtta tgctgtgtga cagtcagaaa ttctcagtgg cttaaaagca caagattgtt 001680
001681 tttcctcact cacactatct atccggggag gggggtctgc tcattatagt gactcgggga ttgcagatga cgcaggctcc 001760
001761 tccaatcttc atgcgaggct tccctggcag gggaagagaa tatggagaac tgcacgctgg ctcttcgtgc ttccacctga 001840
001841 aagcagcaca tgttctttct ctcatatttc attgtcaaag caagtcctgc agccacacct caagaggggt gaggatatgt 001920
001921 aatcctattg cctagaagag gagaactgga gctattgGTG GGGCCCTTTA GTTCCACACA AGCAAGCCAG AGCCCACCCC 002000
002001 CATTTGTTTG CAGAGGAAAC TGAAAAGTCA TCCACCACAA ATTGGAATGC AGATGCTGCA GTTTGCCGCG TCGAGTGTGC 002080
002081 TGTTTAGTCA TGTAAATTGG GAGCGTCTCT ATCCCGGCTG TGCCCTTGAA GCATTAGGGA AATGCTTTTC TCTAAATGCA 002160
002161 CATTTAGACT GAACTGTGGC TGTCCCAACA TGGTGTCACT TTGATGTTGA ACAACCAGAC TCTGGAGATG TATTTTACAG 002240
002241 TTATTATGAT TGCCTTGCCT AGTCCCAGAG GCAGTCCtca ttcattcatt cattcgttca atcatccatt tattcattca 002320
002321 ACAAGTCAGT ACTGAGCACG TTGTGTGGCC CAGAGTGAAC CAGGCTGACA CAGACTCTGC AGGAAGCAAT GAGTATTCCT 002400
002401 GCTGCAGGCA TCGCTTGGGT CTAGAGCCAT GAGTAGGGAG GGGGGTGCAG GAGAGGACAG CCTGAGGCTG TGAGCCAGGG 002480
002481 AGGTGAAGAG ACCTGGAGAT CTGGAGAGGC AGGAAGTTGT GGAATCAGGC CTTGGCTTCA TGGAATCTGG CAGGGGCCAC 002560
002561 AAGGAGGGTG GGATTTGTGG GTTTGTGAGC CTCAAGAGCA ACTGCTGCTG GCAGGCAGGT CACACACTCT CAGGACCCTG 002640
002641 CTGATTGTCT CCCAAACCTT CAGTAGCACA TGCTCTGGGC TTCCAGCTGC ACACTGGTGC AGGGAGAGGG GGTGAAATAA 002720
002721 AAAAGGTGGT TACCAGGCAG AGAGAGGCGA GCTGGAGCAG TAAACATTAG AGAGAAGGAT GCAGGCACGA GGGACAGtgg 002800
002801 atgccttgag gaatcgccat ccacagaaca cccagaagtg ctccacaaaa tgaaacaacc attctttttc aatacatggc 002880
002881 tgggtttgta aaatgaatga atgaatacaa ggaaaacctt cagggtgtca aacataaaga gggtgctgga agcctgagtg 002960
002961 taggggactc tgaagctgtt gggaggcctc aggtggtttg cagatcatgc ttctccaaga accagatcca ggtttcccaa 003040
003041 cagcagcatg atgggcactt tgggcctgat tattctttgt tgtgaggggc tgtcccatgc attgtaggat gtctagcagc 003120
003121 acccctggcc tcacccacca gatgcccgta gcactttcct cctctagtgt gacaatcaga aatgttgcca gactttgcca 003200
003201 aatgtctcct gggggacaaa atcgtccagg tggagaacca caggcctaga ggcttggttg taaagggccc cacaaggaag 003280
003281 aagggctgtg ggcccagggc agtgggcagt tgtaattgag agctccacaa aaaaactaag actttcaaaa gtctacactt 003360
003361 tttgtggaag gatagagaaa aacatccatt cggtggcaaa gagaaatgat aagaacattt gtctattttg gcatgtgctc 003440
003441 tttgtaggaa aaaataaaag ccttctttaa attttgtaat cacaagcctg accacacagg ggtataggta aatgtttgcg 003520
003521 ttatgtgtgt tccaggaaat gccaggtggt ggaactaact ccaagtgtgt tagtagcacc tagccacctg gctggcagaa 003600
003601 gcaaaagcaa attctcttgg gagggacaca ccttcaactt ttgctgtaca agattcccat ggatagagac cagctaagct 003680
003681 caagtttaca atacagaatt acaaagcata cagggaaaca actgatcaca aggaagtcag taaaaaccac aaatggcaga 003760
003761 agtagacctt caagacttaa gatattggaa taatcagatc cagagtatat atatgtatat gtgtgtgtgt gtgtatttta 003840
003841 gagacaaggt ctccatctgt cacccagggt ggagtgcaat gatgatgtga tcttggctca ctgaagcctc taccttctgg 003920
003921 gttcaagtga tcctcttacc tcagcttcct gagcagctag gatgacaggc tcacatcact gtgcttggct gggttttttt 004000
004001 tttctttttt tgtagagaca aggtctcact atgtctcatt atgttggtgg tctcaaactc atgacctcaa gtgatcctcc 004080
004081 cacctcagcc tccc
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Predicted Small Protein

Name NONHSAT112108_smProtein_3752:3889
Length 46
Molecular weight 5471.4246
Aromaticity 0.155555555556
Instability index 55.8933333333
Isoelectric point 5.40985107422
Runs 8
Runs residual 0.0155303030303
Runs probability 0.0353073661898
Amino acid sequence MAEVDLQDLRYWNNQIQSIYMYMCVCVYFRDKVSICHPGWSAMMM
Secondary structure LLLLLHHHHHHHHHHHHHHHEEEEEEEEEELLEEEELLLLLLEEL
PRMN -
PiMo -