NONHSAT112331
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112331 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1790 nt |
Genomic location |
chr6+:38730681..38732470 |
Exon number |
1 |
Exons |
38730681..38732470 |
Genome context |
|
Sequence |
000001 GAAGAGGAAG AATTGCAGTT AGTGTTTCTC ATGCTGAAAA CAGTTGATCC CAAGGACTGG AAGAATCAGG ATCATTATGC 000080
000081 AGTTCTTGGA CTTAGCCATG TAAGATACAA AGCTACACAG AGACAGATCA AAGCAGCTCA TAAAGTAGTG GTTTTAAAAC 000160 000161 ATCATGGAAA GCAGCCAGTG AACCAATAAA AGAAAGGGAT AATGACTACT TCACTTGCAT CACTGAAATT ATAAAATGTA 000240 000241 TGACCCAGTG AAAAGAGGAG CATTTAACAG TGTAGATCAT ACATTTGGAA ACTCAGTTCC TTCTAAAAGT GAAGCAAGGG 000320 000321 ATAGTTTCTT TGAAGTGTTT TTCCCACTAT TCGAAAATAA TTCCAGATGG TCCAAAAAAA GTTTCTAAAC CTGGTGTTAT 000400 000401 GAATTCATCA TTTTATTCCT TCTGGTATAG TTTTTATGCT TGGACAGAGT TTTCTTATTT AAATACAGAA GAAAAAAAAG 000480 000481 CAGAATATTG TGACAAGAGA GGGATTGAAA AGAAGAACAG AGCAACAAGA GCTCAAAGAA AGAAAGAAGA AATGAATTGA 000560 000561 AAACATTAGT TGATAATACA CATAGCTGTG ATACAAGGAT AAAAAAATTC AAAGAACAGA AAGCCAAggc caggcatagt 000640 000641 ggctcatgtc tgtgattctt gcactttggg agaccaagac gggtggatcc cttgagccca ggagttcgag accagcctgg 000720 000721 gcaacatgat gaaaccctgt ctctacaaaa aacttagcca ggtgtgttgg tgcgcacctg tagtcccagc aacttgggag 000800 000801 gctgaggtag gataattgct tgagcctggg aggctgaggc tgagtgaggt gagccgtgat cacaccactg cactccagct 000880 000881 tgggtgagag caagactctg tttcaacatt aaaaaaagaa gagaaaGCCG AGAAAGAAGC AAGATGGAAG AAGCGAGAGG 000960 000961 CTAAAGAAAA ACAAAGACAA GCTGAATTAG AAGCTGCTTG AATAGCTAAG GAGAAAGAAG AGGAAGTTAA ATAAGGAGCA 001040 001041 TTGTTGGCAA AGAAGGGAAA AGATATCCAG AAAAGAGTTG TTAAAAGGAA AAGACAAACC TTCAAAATTC AAGGAAGACC 001120 001121 TGAAATCACT TTTTCTGACA ATAAGTGGAG CAGCTTAAAA AGGTGGAAGA AGTGGAAAAA CTTTGTGATA GGCTTCAACT 001200 001201 AGCAAGTTTA TAGCACTTCA GTGAAATACC TCATCTACAA AAACACTAGG AATGGCTGCT CTCCTAAAAA CGGAAGAAAT 001280 001281 AAATGAGCCA ATTAGAACAG AGAAAGAGGA AGGGGAGGCT TGTGTGTGAC AAGCATCTAA GAATGCAGAG AAATCAACTG 001360 001361 TCGAAGGTGG AAATGGCAGT AAAAATTGGT CAGAGGAGCA TTGGTCTGCA GTTACTAATT AAAGCCATAG GCCCCTTTTC 001440 001441 TGCATGAACA AATTCAATAT GGGAAGTTAT TACCAATTAT ATGAACACAC ATTCTTTTTT TGGAGTCAAG AGAACTTTTT 001520 001521 GGCAAAGAAA ATTGAGCCTC TAAAAACTTG ACCCTCACAA AAAAAAGATG ACAAAAAAGG CTTTGGATAA CCTTTAAAAG 001600 001601 AACATGGAAT AGTCTCTCAA GTACATGAAG TAGGCCTCCT TCAGATGTAC CTGAAGATGA GGAAAAATAG AGGGAGCAGT 001680 001681 GCCTGGCAGG ACAAAAGAGG ACCTCAGGAA ACAATATAAG GAAGTTGTTG AGGTGGTAAA GGCAATGAAA TGCCCAGGAG 001760 001761 CAACTGCTGA ATGCAAATGG AGCCGAGAAA |
Predicted Small Protein
Name | NONHSAT112331_smProtein_398:559 |
Length | 54 |
Molecular weight | 6592.2814 |
Aromaticity | 0.207547169811 |
Instability index | 58.6173584906 |
Isoelectric point | 9.13043212891 |
Runs | 10 |
Runs residual | 0.0284169351127 |
Runs probability | 0.0411146440559 |
Amino acid sequence | MNSSFYSFWYSFYAWTEFSYLNTEEKKAEYCDKRGIEKKNRATRAQRKKEEMN |
Secondary structure | LLLLEEEEHHHHHHHHHHLLLLLHHHHHHHHHHLLHHHHLHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |