NONHSAT112331

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT112331

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1790 nt

Genomic location

chr6+:38730681..38732470

Exon number

1

Exons

38730681..38732470

Genome context

Sequence
000001 GAAGAGGAAG AATTGCAGTT AGTGTTTCTC ATGCTGAAAA CAGTTGATCC CAAGGACTGG AAGAATCAGG ATCATTATGC 000080
000081 AGTTCTTGGA CTTAGCCATG TAAGATACAA AGCTACACAG AGACAGATCA AAGCAGCTCA TAAAGTAGTG GTTTTAAAAC 000160
000161 ATCATGGAAA GCAGCCAGTG AACCAATAAA AGAAAGGGAT AATGACTACT TCACTTGCAT CACTGAAATT ATAAAATGTA 000240
000241 TGACCCAGTG AAAAGAGGAG CATTTAACAG TGTAGATCAT ACATTTGGAA ACTCAGTTCC TTCTAAAAGT GAAGCAAGGG 000320
000321 ATAGTTTCTT TGAAGTGTTT TTCCCACTAT TCGAAAATAA TTCCAGATGG TCCAAAAAAA GTTTCTAAAC CTGGTGTTAT 000400
000401 GAATTCATCA TTTTATTCCT TCTGGTATAG TTTTTATGCT TGGACAGAGT TTTCTTATTT AAATACAGAA GAAAAAAAAG 000480
000481 CAGAATATTG TGACAAGAGA GGGATTGAAA AGAAGAACAG AGCAACAAGA GCTCAAAGAA AGAAAGAAGA AATGAATTGA 000560
000561 AAACATTAGT TGATAATACA CATAGCTGTG ATACAAGGAT AAAAAAATTC AAAGAACAGA AAGCCAAggc caggcatagt 000640
000641 ggctcatgtc tgtgattctt gcactttggg agaccaagac gggtggatcc cttgagccca ggagttcgag accagcctgg 000720
000721 gcaacatgat gaaaccctgt ctctacaaaa aacttagcca ggtgtgttgg tgcgcacctg tagtcccagc aacttgggag 000800
000801 gctgaggtag gataattgct tgagcctggg aggctgaggc tgagtgaggt gagccgtgat cacaccactg cactccagct 000880
000881 tgggtgagag caagactctg tttcaacatt aaaaaaagaa gagaaaGCCG AGAAAGAAGC AAGATGGAAG AAGCGAGAGG 000960
000961 CTAAAGAAAA ACAAAGACAA GCTGAATTAG AAGCTGCTTG AATAGCTAAG GAGAAAGAAG AGGAAGTTAA ATAAGGAGCA 001040
001041 TTGTTGGCAA AGAAGGGAAA AGATATCCAG AAAAGAGTTG TTAAAAGGAA AAGACAAACC TTCAAAATTC AAGGAAGACC 001120
001121 TGAAATCACT TTTTCTGACA ATAAGTGGAG CAGCTTAAAA AGGTGGAAGA AGTGGAAAAA CTTTGTGATA GGCTTCAACT 001200
001201 AGCAAGTTTA TAGCACTTCA GTGAAATACC TCATCTACAA AAACACTAGG AATGGCTGCT CTCCTAAAAA CGGAAGAAAT 001280
001281 AAATGAGCCA ATTAGAACAG AGAAAGAGGA AGGGGAGGCT TGTGTGTGAC AAGCATCTAA GAATGCAGAG AAATCAACTG 001360
001361 TCGAAGGTGG AAATGGCAGT AAAAATTGGT CAGAGGAGCA TTGGTCTGCA GTTACTAATT AAAGCCATAG GCCCCTTTTC 001440
001441 TGCATGAACA AATTCAATAT GGGAAGTTAT TACCAATTAT ATGAACACAC ATTCTTTTTT TGGAGTCAAG AGAACTTTTT 001520
001521 GGCAAAGAAA ATTGAGCCTC TAAAAACTTG ACCCTCACAA AAAAAAGATG ACAAAAAAGG CTTTGGATAA CCTTTAAAAG 001600
001601 AACATGGAAT AGTCTCTCAA GTACATGAAG TAGGCCTCCT TCAGATGTAC CTGAAGATGA GGAAAAATAG AGGGAGCAGT 001680
001681 GCCTGGCAGG ACAAAAGAGG ACCTCAGGAA ACAATATAAG GAAGTTGTTG AGGTGGTAAA GGCAATGAAA TGCCCAGGAG 001760
001761 CAACTGCTGA ATGCAAATGG AGCCGAGAAA
[back to top]

Predicted Small Protein

Name NONHSAT112331_smProtein_398:559
Length 54
Molecular weight 6592.2814
Aromaticity 0.207547169811
Instability index 58.6173584906
Isoelectric point 9.13043212891
Runs 10
Runs residual 0.0284169351127
Runs probability 0.0411146440559
Amino acid sequence MNSSFYSFWYSFYAWTEFSYLNTEEKKAEYCDKRGIEKKNRATRAQRKKEEMN
Secondary structure LLLLEEEEHHHHHHHHHHLLLLLHHHHHHHHHHLLHHHHLHHHHHHHHHHHLL
PRMN -
PiMo -