NONHSAT112336
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112336 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2140 nt |
Genomic location |
chr6-:38874271..38920883 |
Exon number |
5 |
Exons |
38874271..38875613,38890861..38891343,38892689..38892827,38904069..38904168,38920824..38920883 |
Genome context |
|
Sequence |
000001 AGTGAAGCCC ATGAGCCACT AGAAGCCACA TGTTCTGCCA TGTGGAGAAG AATGAGAGAG TACATCCTCA AATTGAGGTG 000080
000081 TGGCATGATG ATTTGGCTGC CCAGAGGAGA ACCTGTCTTT CCCATCTAAA GTGGGAGGTC AAGCCAAGTA GAGGGAAACA 000160 000161 GCAACTGGAG AGCAGATTTG CAAACCAGAA AAGCAACTCA TGAATACAAA TTGCCTGGAA AGCATTTATT ACAACAGAAG 000240 000241 CTCTGCAAGA TATACCGGAA ATTGACAGTG GCATCGAATT CCCAGCAAGG AAGTTTTCTA AGGACACCAA CAGACACCAG 000320 000321 CAGAAGACAG CCTTGCATTT ACAACAAACC ATTGATCCAC AACAAACCAT TGATCCACAC TTTCAAAATC ATTGAGGTGA 000400 000401 AGCATAGAGA ACTGGAGTGG AGACGGCTCT GGCAAATCCA AACAATATCA AAAGCACTCT CATACTGAAA ACCCACAGTG 000480 000481 CTGAACCACA GCTGAGATGT AAAATATTTC ACAAAATCTT CTTCACCCTC TATAGTATTT CACCTGAGAG TGCATGATTT 000560 000561 AAGTTGCAAG CACTGTCATA GATGATGGGA TTCAGAGATG AACACATGGA AATGGACTTT ATGTTCTCTA ATGTCACAAA 000640 000641 GAAAGAGTGA TTATGAAGAA GACCCAGATT CCCACCTATT AATCTGAGCT TTGAATTCTT TACTTTGCTG GGTCCACCGG 000720 000721 ATTTTTTCTC CACTCAGCCC ATCGATGAGA GTGGAGGCGG CCTGCATCTT TTTCCGCATC TCCACAGTCA AATCCCTGAT 000800 000801 TTGCCAGAGA TGATCAAGAC TGCAACTTTT TATTGAGCAG CTCAATCAAG AACTAATTGT GTTTTCCTGT GCTCCAATAG 000880 000881 CTATCACCAA AAAGCTATCT CCACTACCAC TCAATCATCT CTTTAAAATG TCCAGGGGTG CCCTCTGTAC TTTGACTCAG 000960 000961 AGTCAGTCTA ATCAACTCTG GCTCCAAAAT ACTTAACTAA TTTTTGCACC ATTAAGCATC TGTATACCAT GGTGTAGGGA 001040 001041 AGAGTTAACA CAGCAGGCCT AATCTTGAAA AGGGTATGCT TGCAGAGCTG ACCCTTGTCT GTTATCAGGG AACTTGGCTT 001120 001121 TTGGAATGTC TCCTCCATTA GTAATTGATA AGGTTGTTTT GCAGTGCCAA CTAGACTGTT TACACAAACC TTGTGATACA 001200 001201 TGGCAAACAT CTATCTGCTT TCCTTCTAGG AATCTGGAAC TTTGGTAGTT GTAGCTAGGC AGGAAGTGAC CAAACCTAAA 001280 001281 AAAAAACCAC TGGACTCTGA ATCTCAAGTG GGCTTCCCTG AATGGAAACA GTGCATATGT TACTGCCCTT CATACTGGAT 001360 001361 GGAGAGGACG TTCTGCATGG CCCCTTGGCA AAAGCATAGG AAGCTGGAAC ATCAATTCCA TGTTCCTGGA ACATCGATGA 001440 001441 CTCCACAAGA TGAGTCTTTT TCTCTACTGA TCTGGCTCCG TATCCTTACT GTGTTGCCAC AATAAATCTC AGCCATGAGT 001520 001521 ATAACTATAA GTTGAACATC CCTTATTCAA AATGCTTGGG ACCACAATGT TTCAGATTTC AGATTTTTTT CAGATTTTGG 001600 001601 AATGTTTGCA TTTCACTTAC TGGTTGAGCA CCCCCAAATC AAAAAATCTG AAATCTAAAA TGCTCCAATA ATGAGCATGT 001680 001681 CCTTTGAGCA TCATGTCCGT GCTCAAAAAG TTTCAGATTT TGGAGCATTT TGGATTCCAG AGTTTTGGAT TTGAGAAGCT 001760 001761 CGACCTGTAT ATGCTGAGTC TGGTGAGTCT TTCTGATGAA GTACTAAAGA TGTGAGTGCT CACGGAAGTG CTGATACAAG 001840 001841 CGGTTTCAGA AGTGGCAGTA CAGACATCCA TTTACAACTA ACAGAACTCT TTCAACCATT CTATACTCCT CACTAGTATG 001920 001921 CAGATAGATG GACAGATACT TTGCTTCTCC TAAAATAAAT TATAAGACCA AAGTGAAGAC TGAAGAGACA AGTAAGGAAC 002000 002001 CATGTTCAAA ATTAAACAAA GCATCTGGAG ATGGGCAGCA TTCATTTCAC AGGAACTTCA GAAAATCTGC TAAATCTCGT 002080 002081 ACATTAACCA TGTCTAAAAT AAAAAATGTA CTAAATAGCA AAAAAAAAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT112336_smProtein_29:202 |
Length | 58 |
Molecular weight | 6814.6281 |
Aromaticity | 0.0701754385965 |
Instability index | 57.1315789474 |
Isoelectric point | 9.23590087891 |
Runs | 11 |
Runs residual | 0.0390350877193 |
Runs probability | 0.0496137849079 |
Amino acid sequence | MFCHVEKNERVHPQIEVWHDDLAAQRRTCLSHLKWEVKPSRGKQQLESRFANQKSNS |
Secondary structure | LEEEELLLLLLLLLEEEELHHHHHHHHHHHHLLLEEELLLLLHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |