NONHSAT112460
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112460 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2388 nt |
Genomic location |
chr6+:40253526..40347522 |
Exon number |
9 |
Exons |
40253526..40253611,40254035..40254157,40255338..40255783,40302671..40302862,40304768..40304998,40308113..40308364,40312083..40312495,40313749..40313891,40347021..40347522 |
Genome context |
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Sequence |
000001 CAATAAATCA CCATCCAGGG TCCCATCAGA AATGATCAAG GTGGCATTGA CGAGCCAAAA CGCACCAAGA TCCACAGAAA 000080
000081 GAAGAGTGAG GCTCTATTCT GAAACACCTT TTGGTGTGAA GCGGGCTTCT CTTCTTTTTG AAGATGTGGG CGTGCGTCTG 000160 000161 TGTGTTTGAT GGCGGGACAC AGAGGGTTGG AGCTGGGGAA ACACTTCAGG ATGAAAAGTA TTGTTCCTGA TGCGTCTGTG 000240 000241 AGGGTGTTGC CAAAGGAGAT TAACATATGA CTCAGTGGAC TGGAAAGGCA GACCCACCCT TAATCTGTCT GGGCACAATC 000320 000321 TAATCAGCTA CCAGCATTGC CAGAATAAAT GCAGGCAGAA GAATATGAAA AGACCAGACT GGCTTAGCCT CCCAGGCTAC 000400 000401 ATCTTTCTCC TGTGCTGGAT GCTTCCTGCC CTCGAACATC AGACTCCAAG TTCTTCAGCT TTGGGACTTG GACTGGCTTC 000480 000481 CTTGCTCCTC AGTTTGCAGA TGGCCTATTG TGGGACCTAT TACTCCTTAA TAAATTCCCC TTTATATATA CATCTATCCT 000560 000561 ATTAGTTATG TCCCTCTAAG GAACCCTGAC TAATACATCA ACTCTGCTAG CTTCTGGACT TCCAAGAACC AGAACTGTAA 000640 000641 GAAAATAAAT GTCTACTTGT TGAACTGTTC TGGTTTTAAT TCCATTCCCT GCAATTGGAG CCTGAATAAT GAGTTATTTC 000720 000721 ACAGGAAGAT TGATCTGGGT ATTAGGGCAT CATTTAGTTT GCCATTACAA CAGCCAATTT TGGTTACATG CTCAGCTGTG 000800 000801 AAGGGGAAAT GGGCCAGCCT GCTGGAGCTT TCTAAAGCAT GGAGCTGGCT CTACAAACAG AGGGAGGTTC TGCAAACAGC 000880 000881 GCAAGTGCAT TAAGTAGCTT CAGATCCTCT AACCAGCAGC TTGCTCTATA CACAGAGAAC GGTGCAGTCT TCAGGGATCT 000960 000961 GGTGAGCAGA CGGCTACAGG ATTTGTACCC CAGGATTAAA GCCAGAAACC AAAAGACCAT CTGCCGGTAC CCACAGGAGG 001040 001041 GAGGATGCAG GTCATTTTCA TGTGCAGTGA CATCGTAGCT CATCCATGAG ATGGAATCAC TCTTAGAGAT TGAGAGGCTT 001120 001121 AGGCGGTGTC AGTCAGAGAC GGGCCACACA TCTCAAGCCG GGACAGAGGC TGCCAGCAAA GCCCTCTTCA ACCCACTGGA 001200 001201 GTCAGCAGGC CCAGTGCTTC ATAAACCAAG TTATGAGAGC AGAGCTGAGA ATTTCTAAGG AGCCTCCTTT TTAAAGCCTT 001280 001281 TCACTTCACC TGCTCTCCAA CAGCTGGTGA GTCTTTCCAG GGCAGCACAG TCCAGCAGAA AGAGATTTAA TAAGGGAAAT 001360 001361 AGCGACTTAC AGAGGGATCA GAGGGCCTAG ACAAAAGAAG TTTAGGACCA CCCACCGCTA GGCTTTTGGC TTAAGGTTGC 001440 001441 ATCCCCACAG CTGTGATTCT GAGACCAGGA GACAGCTGCT GCCCCTGCAA GGAAGGACCA CTAGTGTGGC TCCAGCTGCC 001520 001521 CCGAATTCAG GAAGCTGGTG ACAAGACCAT GGATATACCA GTTGCTGCAA ATCCTCACAT TGGCAGGAGC CCGTGGACCA 001600 001601 TCCAGCACAC TGCAGTGGAG CACCTCTGCC TCTCTGCCAC TGTCCAGAGC TCATGGAAAT GCCTCTTCTT GGCAAAACTG 001680 001681 AAACTGCAGC CAGATCCAAA CAGCAAGAAA CTCTGGGAAA TGTCACTTTT GTCCTGCTAG ACCCCATTGT TTTCCCTGCC 001760 001761 TGTTCCCTGT GGTGGTGTGG TGTGGTCATG AAGGTTCCGC CTGCCTGGGG TCAGGTGCAG GTTCCACTGT TCTCTGTGTT 001840 001841 GACCTCGATA ATCTTGTGTG ACTTTTCTGT GTCTCAGTTT TCTTATGAAC GGTCACTGCG CAGGATCAAG CTACAATGAA 001920 001921 GAGGAGGGAG GCAGTCTGCG CGCACCGCCA TTTTCTAGGA ACTGGGAAGC CCCCCCACCC CTTAGGAAGA TCCATCCCTG 002000 002001 TGGAACCTTG CCCAGGCTTA CCAGCCTTTG CTGAGGTTGA TCTATTGTCC CTCCTTGTCC CCATCAAAAT ATCCAGCACT 002080 002081 CCACCTTCAG GGAGTAGACT TGACCCTCAA ATAGCAAGTT CAGCCTTCCC AGGTCTAGGT TCCCTGGGAG GTCAAGATTC 002160 002161 GTCTGGTTCC TTAGTACAGA GGGCTAGCTG TGAGTTGGAA TCCCCCTATG AGCTTTAGAA TCAGTCAAGA GGAATTGGGC 002240 002241 CCCTTCCCTT CATCCCTCTT CTTTTCCCTT TTTGTCCCAG AGCTCAGCTC TGACTCAAAA GTTTTTCCAT TTACCATCAA 002320 002321 CATGGAAACT TGGCTCCTCA CGTAGGTATA TTATCCCCCT TTTGTACATG GTCTTGTTGA TCCAAACT |
Predicted Small Protein
Name | NONHSAT112460_smProtein_1652:1918 |
Length | 89 |
Molecular weight | 9931.6644 |
Aromaticity | 0.102272727273 |
Instability index | 63.0886363636 |
Isoelectric point | 8.58807373047 |
Runs | 18 |
Runs residual | 0.0731818181818 |
Runs probability | 0.0731957447644 |
Amino acid sequence | MEMPLLGKTETAARSKQQETLGNVTFVLLDPIVFPACSLWWCGVVMKVPPAWGQVQVPLF SVLTSIILCDFSVSQFSYERSLRRIKLQ |
Secondary structure | LLLLLLLLLHHHHHHHHHHHLLLLEEEEELLLEELLLLEEEELEEEEELLLLLEEEEEEE EELEEEEEEELLLLLEEHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHH HHHHHHHHHHHHLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooTTTTTT TTTTTTTTTTTTiiiiiiiiiiiiiiii |