NONHSAT112687
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112687 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1165 nt |
Genomic location |
chr6+:40454054..40455602 |
Exon number |
2 |
Exons |
40454054..40454614,40454999..40455602 |
Genome context |
|
Sequence |
000001 GTAATCTTAG AAGGAACTCA AGACCCCTGG GCTAATGAGT TTCCATTCCT GACTGTGCAA TAAGAGCTGG ATGCATCTGT 000080
000081 AACAAAAGGC GGGACCCCTG AGCCCTGGAG TACAGAGATT CCTTGGGGAA TTCGGCAGTT AGTGGGGCTT TATGGCAGAT 000160 000161 TCTTTCAGGG TTATGATGGG CTTGGGGGGA TGGCAGGAGG GCATCTCAGC GGACCTGTGC CTGGGTAAGG AATGGGTAGA 000240 000241 GGGTCAGAGA ACTTGCTGGG CACTTCTCTG GGTGGAGAAT GAGCAACAGA AGTGTCCCAT GGTTAGGATG AGGCCGCCTC 000320 000321 ATTTGAAATG TTAATAAATC ATCTGGAAAA GGGATTTACG CAGTGAAAGC TGGGGATGTG CAAATGGCAC TAAGTTTTTT 000400 000401 GAGGGAATGA AATGTCAAGC CAATGGGGAT ACGCTACAGA ATCCCACAAG GGTGTGTACG AGTGGGCAGA GAAGTGACAG 000480 000481 ATGAGATTTG GTGTGGGCAA GTGTAAGATA ATGTATTTAA AGACATATCT CAAGTGCTGT ATGACTTCCT TCTGAGATGA 000560 000561 TTTGGGGAGG TCATCCAGTT CTATGGTGAG TAGATCATTT ATGCCAATGA GCCCCAAGTT CATGCCCTCA GCCCTGGCTT 000640 000641 CACCTGAGCT CCAGACTCAC CATTTGACTC TCACTGACAT CACCACTGGG GTGCCTCACA GGTGCTCCAG ATCTGGCAGG 000720 000721 GCGTCAATGA GTTCTTGCTT CTTCCCTTAC ACCTGTTCCT CCCGCAGCCT TCCTCATCTC ACTAAATGGC AACTCCATGG 000800 000801 AGCCTATCCT TGCATCTCTG CAAAATGCAC ACATCCCGAA AAAGTCGGCA GATGGGAAAG GGAGGTAGGC AGATAGCTGT 000880 000881 GAAAGGTGCA TGGCCTCTGG CTTTTGGAAG GATGACCAGA AGGGATGGCT GGAAGCCCAA AGAACTGTGA AACTGATGGG 000960 000961 GGAAAGTCAA TGGGTTTCAT CAGTGAATCC AAGGATGGGA TGGCTAGGAT TTGGAAGTGT AAAAAGATAC ATGTCAGGAT 001040 001041 GAAACCAAAG GAAGCTACCA GGCCCACTGT GTATTTCCAC ATGGAGTGCC GCTGCCCACC CTTCCCAGCT GTCTGCTGGA 001120 001121 GGTATCCTGT GCCTTTCATC CAAATCCTAC TTTTTCTCTG CATCC |
Predicted Small Protein
Name | NONHSAT112687_smProtein_785:949 |
Length | 55 |
Molecular weight | 6180.2946 |
Aromaticity | 0.0740740740741 |
Instability index | 47.5074074074 |
Isoelectric point | 11.7344360352 |
Runs | 11 |
Runs residual | 0.0410117434508 |
Runs probability | 0.0186844598609 |
Amino acid sequence | MATPWSLSLHLCKMHTSRKSRQMGKGGRQIAVKGAWPLAFGRMTRRDGWKPKEL |
Secondary structure | LLLLHHHLHHHHLLLLLLLLHHHLLLLEEEEEELLLHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |