NONHSAT112919
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT112919 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2746 nt |
Genomic location |
chr6+:43745457..43754176 |
Exon number |
3 |
Exons |
43745457..43746273,43746626..43746655,43752278..43754176 |
Genome context |
|
Sequence |
000001 TGGGAACAGG TGGTCCCAGG TCGTTTCCTG GCTAGATTTG CCTTGTCTGG CTCCTGCCCC TGAGTTGCAC AGGGGAGGTA 000080
000081 TGGTGGGGTC TTGCCTTCTG TGGAGAAGAT GCTTCATTCC CAGCCCAGGT TCCCAGCAAG CCCCAACCAT CTCCTTCTCC 000160 000161 CTGATGGTTG CCCATGGGCT CAGGAGGGGA CAGATGGATG CCTGTGTCAG GAGCCCCTCT CTCCCTCTCT TGGAGAGAGT 000240 000241 CCTGAGTGCC CCCCCTTCTT GGGGGCTTTG TTTGGGAAGC TGGATGAGCC TGGTCCATGG AGAGTTTAAA AAGTCTTTTG 000320 000321 GTGTTACCTG GTAATGGGGC ACATCTCAGC CCAGATAGGG TGGGAGGGAG CTGTGAAACA CAGGGAGGGG GTTGCTTTCG 000400 000401 GGTATCTACT AGGAGTCAGG GTGAAGCCTA GAGAGGATGA AAGAAGGGGA GGGGATGGGG AGTGGTAAGA ACCTAGGATT 000480 000481 TGAATTCCCA GCCTGGCCAA CCCTTGCAGC CATGTCTTGG CCTCAAGTGG AACAAGGGCT CCTTGAGGCC AGCAGGGTTG 000560 000561 GGGGAGTTGG GGTGGGCCTG AGCCTCTTTC CTGCTAGAGC TCTTGGTCCT CCCTGCCTCC ACCACCCATC CCTGCTCTGC 000640 000641 AGAACCCCTG GGTGCTGAGT GGCAGGAGCC CCAGGGTTGT CCCATCTGGG TATGGCTGGC TGGGTCACTA ACCTCTGTGA 000720 000721 TCTGCTTCCT TCCTTTCCAG ATTATGCGGA TCAAACCTCA CCAAGGCCAG CACATAGGAG AGATGAGCTT CCTACAGCAC 000800 000801 AACAAATGTG AATGCAGACC AAAGAAAGAT AGAGCAAGAC AAGAAAAATG TGACAAGCCG AGGCGGTGAG CCGGGCAGGA 000880 000881 GGAAGGAGCC TCCCTCAGGG TTTCGGGAAC CAGATCTCTC ACCAGGAAAG ACTGATACAG AACGATCGAT ACAGAAACCA 000960 000961 CGCTGCCGCC ACCACACCAT CACCATCGAC AGAACAGTCC TTAATCCAGA AACCTGAAAT GAAGGAAGAG GAGACTCTGC 001040 001041 GCAGAGCACT TTGGGTCCGG AGGGCGAGAC TCCGGCGGAA GCATTCCCGG GCGGGTGACC CAGCACGGTC CCTCTTGGAA 001120 001121 TTGGATTCGC CATTTTATTT TTCTTGCTGC TAAATCACCG AGCCCGGAAG ATTAGAGAGT TTTATTTCTG GGATTCCTGT 001200 001201 AGACACACCC ACCCACatac atacatttat atatatatat attatatata tataaaaata aatatctcta ttttatatat 001280 001281 ataaaatata tatatTCTTT TTTTAAATTA ACAGTGCTAA TGTTATTGGT GTCTTCACTG GATGTATTTG ACTGCTGTGG 001360 001361 ACTTGAGTTG GGAGGGGAAT GTTCCCACTC AGATCCTGAC AGGGAAGAGG AGGAGATGAG AGACTCTGGC ATGATCTTTT 001440 001441 TTTTGTCCCA CTTGGTGGGG CCAGGGTCCT CTCCCCTGCC CAGGAATGTG CAAGGCCAGG GCATGGGGGC AAATATGACC 001520 001521 CAGTTTTGGG AACACCGACA AACCCAGCCC TGGCGCTGAG CCTCTCTACC CCAGGTCAGA CGGACAGAAA GACAGATCAC 001600 001601 AGGTACAGGG ATGAGGACAC CGGCTCTGAC CAGGAGTTTG GGGAGCTTCA GGACATTGCT GTGCTTTGGG GATTCCCTCC 001680 001681 ACATGCTGCA CGCGCATCTC GCCCCCAGGG GCACTGCCTG GAAGATTCAG GAGCCTGGGC GGCCTTCGCT TACTCTCACC 001760 001761 TGCTTCTGAG TTGCCCAGGA GACCACTGGC AGATGTCCCG GCGAAGAGAA GAGACACATT GTTGGAAGAA GCAGCCCATG 001840 001841 ACAGCTCCCC TTCCTGGGAC TCGCCCTCAT CCTCTTCCTG CTCCCCTTCC TGGGGTGCAG CCTAAAAGGA CCTATGTCCT 001920 001921 CACACCATTG AAACCACTAG TTCTGTCCCC CCAGGAGACC TGGTTGTGTG TGTGTGAGTG GTTGACCTTC CTCCATCCCC 002000 002001 TGGTCCTTCC CTTCCCTTCC CGAGGCACAG AGAGACAGGG CAGGATCCAC GTGCCCATTG TGGAGGCAGA GAAAAGAGAA 002080 002081 AGTGTTTTAT ATACGGTACT TATTTAATAT CCCTTTTTAA TTAGAAATTA AAACAGTTAA TTTAATTAAA GAGTAGGGTT 002160 002161 TTTTTTCAGT ATTCTTGGTT AATATTTAAT TTCAACTATT TATGAGATGT ATCTTTTGCT CTCTCTTGCT CTCTTATTTG 002240 002241 TACCGGTTTT TGTATATAAA ATTCATGTTT CCAATCTCTC TCTCCCTGAT CGGTGACAGT CACTAGCTTA TCTTGAACAG 002320 002321 ATATTTAATT TTGCTAACAC TCAGCTCTGC CCTCCCCGAT CCCCTGGCTC CCCAGCACAC ATTCCTTTGA AATAAGGTTT 002400 002401 CAATATACAT CTACATACTA TATATATATT TGGCAACTTG TATTTGTGTG tatatatata tatatatgtt tatgtatata 002480 002481 tGTGATTCTG ATAAAATAGA CATTGCTATT CTGTTTTTTA TATGTAAAAA CAAAACAAGA AAAAATAGAG AATTCTACAT 002560 002561 ACTAAATCTC TCTCCttttt taattttaat atttgttatc atttatttat tGGTGCTACT GTTTATCCGT AATAATTGTG 002640 002641 GGGAAAAGAT ATTAACATCA CGTCTTTGTC TCTAGTGCAG TTTTTCGAGA TATTCCGTAG TACATATTTA TTTTTAAACA 002720 002721 ACGACAAAGA AATACAGATA TATCTT |
Predicted Small Protein
Name | NONHSAT112919_smProtein_1319:1558 |
Length | 80 |
Molecular weight | 8868.8558 |
Aromaticity | 0.0759493670886 |
Instability index | 41.2227848101 |
Isoelectric point | 4.59344482422 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0444107208813 |
Amino acid sequence | MLLVSSLDVFDCCGLELGGECSHSDPDREEEEMRDSGMIFFLSHLVGPGSSPLPRNVQGQ GMGANMTQFWEHRQTQPWR |
Secondary structure | LEEEEELLEEELLLLLLLLLLLLLLLLHHHHHHHLLLEEEEEEEELLLLLLLLLLLLLLL LLLLLHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |