NONHSAT113918

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT113918

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

592 nt

Genomic location

chr6+:88494578..88621448

Exon number

5

Exons

88494578..88494685,88494829..88494980,88619500..88619632,88620397..88620516,88621370..88621448

Genome context

Sequence
000001 GTGAGGTGCT ATTGGCATGC ACTGAGTGAA GTTGGTTGAA ATTTACACAG AGTTGGCTGC CACAATATGG GCTGAGCTGG 000080
000081 AACAAGAGGT CAGAGGCCAC AGAGAAAGAG ATCATCAACT GCAGTTGCAA AATCCATCAT GATATTTGCT GTAAACAGGA 000160
000161 TATCTAATTC AGCTGGAGCA TCTCCATAAA GATTGTTCTA GGCCTCTCTG GGGATCTTCA ATGTCCCAGG GCAAACTCTT 000240
000241 CACTGTCAAC TCTTTTCTGA AAGAGTGCAA TGATTTCAGG ATCAATGATT TCTGAAAATG AACATTTTTA ATAAAGCAGC 000320
000321 TCTGGACTGT GATTCCTAAC TATTGGGGCA TTGGCATTAA AGAAAAGAGA TTGGACATTT TGAACCTTGT GTGTGTCAAA 000400
000401 ATGAAACTTT TTGTCCCTGG ATATGTTGAG ACGGGAAGAA GGAAAATCTG ATTCTATGGT TTACTACACT CCAGGAATTA 000480
000481 TCATCCCTCT AACACCACAC ATGATGGAAA GAGAAAACTT GGGGCTCAAT GGTTGCTCCC AAAGAGTACC CAAATGCTGG 000560
000561 TCCATGAGCT GAGACTGGGC ACCTCACACT AC
[back to top]

Predicted Small Protein

Name NONHSAT113918_smProtein_422:571
Length 50
Molecular weight 5643.5674
Aromaticity 0.0612244897959
Instability index 49.2
Isoelectric point 7.81549072266
Runs 9
Runs residual 0.0216216216216
Runs probability 0.0318161298554
Amino acid sequence MLRREEGKSDSMVYYTPGIIIPLTPHMMERENLGLNGCSQRVPKCWSMS
Secondary structure LLLLLLLLLLLEEEELLLEEELLLLLLHHHHLLLLLLLLLLLLLEEELL
PRMN -
PiMo -