NONHSAT113988
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT113988 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2083 nt |
Genomic location |
chr6+:91211779..91213861 |
Exon number |
1 |
Exons |
91211779..91213861 |
Genome context |
|
Sequence |
000001 cctgtaatcc cagctctttg ggtggccaag gtggaggatt acttgagccc agaagtttga gatcagcctg ggcaacatag 000080
000081 ggaaactctg tttttacaaa aaattgaaaa attagctggg tgtggtggca tgtgcctgta gtcccagcta tgtgggaggc 000160 000161 tgaggtggaa ggatcacttg agtccaggag gctgaggctg cagtgagccg tgattatacc actgcactcc agcctgggca 000240 000241 agagggagcc cttgtctcaa aaaacaaaac aaaacaaaac aaaaaataaa aggaaaaaaG TACAAAATAA GACATTTTTT 000320 000321 CTCTCAAATA ATCAAAGAAT TGTCTCTGAG TTGGGGCAAA CTTGGCTGTT TCATTTTGAT GAACCTGCCT CTTGCTTATC 000400 000401 CACGGAACAG TCTGCTACAA CAGCCTGCTT GAATACTTTG CATTTCGGAC CAACCACCTC CACATTTGTC ATTATGACAG 000480 000481 GTTGTTATTT ACGGGGAATG GCAGGTTGTT GAAATCCTAA ATGAAGCACT AAGGAATGAA GCTCTAAGGA CCAATTATAG 000560 000561 CAACAATGCT TAAACATTTC AGGCAGCAAA ATTGGCTCAG CTACAAGCTT GTTTAGGCAA GAAAAAAATG CATATTTCCT 000640 000641 ATATTTTTGA TTTATAGACC AACCCAAAGA GTGTGTGATT TCTGTTGATT TTAACATAAA GTCACCTAAA TTAGGAGTAT 000720 000721 GCAGTTTTAA CTGCAATAGT TGGCATGGCT AATATGGGAA AAAGTAGATT AACCCGATGC CTCCCAAATG TGCAAATATG 000800 000801 CTAAGCCATG TTTAAAACTA AGGTAACTCT CTAGGGTAAT TTTTCTGGTC TGCTGTGATG TCCCCAAGTG GCTGGCAAGT 000880 000881 GTCATCTATT GGCAAGGCCT GAACAAGAGC ACAGCAGGAA ACTTTCCCCT TATCTGTTTG AATGAATGAC TAAGCAAAGT 000960 000961 TTAAAGGCCA TTTCACTCTG CTCTTAAAGG TATGTGAGCA TGAAGATGAC ATGCTCCTTT GGTTCCCAGT TTCAGTGTCT 001040 001041 GATCAGTTAG GCATAAAGGT GCTTTTGTCT ACACAGGTTT CATGTGTGTG TTCTGTTGAT GAGTCTGTTG ACAACTCCAT 001120 001121 AAACTAAGTG TCTCCAAGGC AGGCAGAGAT TGAGATTTGT TTCTCAGAGA TTAATGAATG TGCCTCCATT TCTTTCCCTC 001200 001201 AAAAGAGACA ATACCACTTC CTGTAGCTTT CCTTGCGTGC TTCAGATTGA AAACCTTATT GGGCTGCAGA AAGATTTATG 001280 001281 ATTCACGTAT ATGTCGGTGG CTATTACTGT AGAATAATCT GGAAAACTGC TAGTCACAAT TTGTTCCCTC TCAATGGTTA 001360 001361 CCGACTGATT CATTATGCTG GGCTCTTGTG TCTTCTCTCC TTCCTTCACA TCTCTCCTCA AAATGTTAGA TTCTTTGCCA 001440 001441 CACTATTTAC AGACTGTGGT AAATATAGCA GGTTGATATC AGGGTCACTT GTATTATATA TGCTATAATG CCTACACCAT 001520 001521 GTATTTTTAT GTCAAGTGAT TAAGAAATGT ATAAGAAAAA TGGTAATAAG CTCTCCATCA CCATCCACCC TTCCTGGGAT 001600 001601 AAACACTGTT AAGAGTATCC TTCTCTCTTG TTTTCTGTAT TCATATGCAT GTCATATTAT AATTTTTTGT CTTGCTTAAC 001680 001681 AGTTTTTTTT GACCTAAATA GTATATTTGC TCTTCAATGT CCTATTTTCA TGTAGCAATA GGTCACAGAC ATCCATCTAG 001760 001761 ATCTCTGTAT ATAGATTGAA TGCATTCCTT TAAAAAACAT TAatttacca taattgattc aatctttccc ctactgatag 001840 001841 acatttttct tgttgaggtt atttttttaa taaaaaattt gggggccatt atacacagtg tttcaaataa cttcttggta 001920 001921 tctatgtctt tacatacaga tattcttaag gctatagatt tttcaaagta ggaatgttgt gtccaagggt atatttttac 002000 002001 ttttaatCGA GGCTTGTTTT GTTATATTTA ATACTTTCTA AGtaataaat acaacaaaat aatataatta tatataatat 002080 002081 aat |
Predicted Small Protein
Name | NONHSAT113988_smProtein_1277:1507 |
Length | 77 |
Molecular weight | 8791.3621 |
Aromaticity | 0.171052631579 |
Instability index | 46.1947368421 |
Isoelectric point | 9.40899658203 |
Runs | 16 |
Runs residual | 0.0691167574108 |
Runs probability | 0.05221581876 |
Amino acid sequence | MIHVYVGGYYCRIIWKTASHNLFPLNGYRLIHYAGLLCLLSFLHISPQNVRFFATLFTDC GKYSRLISGSLVLYML |
Secondary structure | LEEEEELLLEELEEHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHLL LLLEEEEELLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHH HHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTT TTTTTTTTTTTTTTTi |