NONHSAT114079
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT114079 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
8380 nt |
Genomic location |
chr6-:97706539..97720981 |
Exon number |
5 |
Exons |
97706539..97709850,97711211..97715878,97717778..97717868,97720580..97720757,97720851..97720981 |
Genome context |
|
Sequence |
000001 TAATTATTTG AACTATGATT AACATTGTCT ATTTTGGTTT CAGGGAAGGT ATCAACTCTA CACTGCAAAG CAGACAATAT 000080
000081 TAGGCAGCAG TGTGTACTAT TTCTCCATTA TGTTAAAGTT TTCATCTTCA GGTATCTGAA AGTACAGAAT GCTGAGAGTC 000160 000161 ATGTTCCTGT CCATCCTTAT GAGGCTTTGG AGGCTCAGCT TCCCTCAGTG TTGATTGATG AGCTTCATGG ATTACTCTTG 000240 000241 TATATTGGAC ACCTATCTGA ACTTCCCAGT GTTAATATAG GAGCATTTGT AAATCAAAAC CAGATTAAGC TTTTTCCACC 000320 000321 GTCATGGCAT TTATTACATC TCCACTTGGA TATACATTGG CTGGTGCTAG AAATTCTTTA CATGCTGGGT GAAAAATTGA 000400 000401 AACAAGTTGT ATATGGTCAT CAGTTTATGA ATCTGGCAAG TGACAATTTA ACCAACATCA GCCTATTTGA AGAACATTGT 000480 000481 GAAACTCTCC TTTGTGATTT AATAAGCCTG TCACTCAACA GGTACGACAA GGTAATGCTT TAAGAGTTTG TATTTTTGAG 000560 000561 ACTTAAAGAC AGTATTCAGT CCTTAATGCA TGTCGTTTAA TCTGTAAGAA TTTAAACTAA AATGCTTTAT ATGTTCTAAT 000640 000641 TTTATATTTA GTTGCTATTA TCTGGGAGCT GAAAGGGAAA ACAATTTTTA TTTAAACATC TAAAAGAGGC TGGAATTGGT 000720 000721 ATTTTAGAGC ttttcttttt ttcttttttt tttttttttt AAGAAAAATA GCCTTTTCTA TTTTGACAAA AATAAATAAA 000800 000801 TAAAAATGAT GTTTACCGAA ATCACTGGAA GCCTAATTTC TATCCAAATA GTAGAGGCCA GCTCTTTAAT AATGTATTGT 000880 000881 ATTACTGTTG TGTAATAATA AAATAAATGC TTACTTAAAG TTACTTTACA CATTTTAAGA GAGGATTTTC TTGCTTGTTT 000960 000961 TCATAAAAGG TCTCGAATCT GGGTAAAATT ATGTGTTTTT ATTAAATTAT GTTTATCATA GAGTGTTTAA TGGAGACAGT 001040 001041 GATTTAAAGG TGCTACAGAA CATGTTTATT TTTAAGTAGT ATAAATGTTT GTAGAGTATT ATCTGTTATT TTAGATTACA 001120 001121 AGCGTAAAGA CTGTTTTTGG GAAATCAAGA TTGAGGGAAA AGGAGTTTTA TAATTTTTCA AAATTTAGAT TTTTTTATGC 001200 001201 ATTATCAATA TTTTTACAAT TTAGTGTGTA TGTGTATTAG TGGATTAACC AGATATGATA GAATAACTTT TAAATATTTA 001280 001281 TTTAtttttg ttaattgaca aaattataca tatttatcat atacatcatg ttttgatatg tgtatacagt gtagaatggc 001360 001361 taaatatagc taattagcat atgtattatc tcacattctt attttttgtg tgagaacact taaaatctat gcttctagtg 001440 001441 attttcaaga atacaatata gtacattgtt tttaactgta gtcatcatgt tgagcttatt cccttatcta actgaaattt 001520 001521 tatatgcttt gatcaacatc taccccgcct ccctcctaat cctcctcaca gcccttggta aggatcatct tactctgctt 001600 001601 ctatgagttc agctttttta gattctacat ataagtgaga ttatgtgtta cttgtctttc tgtgcctggc ttatttcact 001680 001681 taatttaatg tcctccaggt tcatccatat tgttgcaaat gacagcattt ccatcttctc aaggctgaat agtaGGgtca 001760 001761 tacactgtgt aacaaagttt tagtcagtga cagaccacat atacaaggta gctataccac atagcctagg tgtgcagtag 001840 001841 taggctgaaa aagtttaagt acaataaatc atgttagcct aaagacgtgc ttctcagaac atgtcctgct gttaagtgac 001920 001921 acatgactgt attccattgt gtatataaac cacattttct ttatgcattc atctgttgat ggacaatttg gttgattcca 002000 002001 tgtcttggct cttataaata atgctgcagt gaacatggga atgcagatat ctcttaaaca tactaatttc attttctttg 002080 002081 caaatatacc tagtaggatt gctggatcat gtggtagttc tatatttaat tttgtgagga atttgcatac tgtattacat 002160 002161 gatggctgta ccaatttaca ttctcaccaa actgtgcaag ggttttcttg tcaccacttc ctctctggcg cttattatct 002240 002241 tttgtctttt tggtaatagc cattataaca ggtttgaggt gatatcttat caagttttaa tttgcatttc cataatgagt 002320 002321 agtgacgttg agcatttttc atgtactgct tgcccatttg tatgtcttct tttaagaaat gtcagctagg cgcggtggct 002400 002401 cacgcctgta atcccagcac tttgggaggc cgaggcaggc agatcacaag gtcaggagat cgagaccatc ctggttaaca 002480 002481 tggtgaaacc cgtctctact aaaaatacaa aaaattagcc gggcatggtg gtgcgtgcct gtagtcccag ctacttggga 002560 002561 ggctgaggcg ggagaattgc ttgaacctgg gaggcgcagg ttgcagtgtg ccaatattgc gatattgtgc cactgcactc 002640 002641 cagcctggca acagagagag actctgcctc aaaaaaaaaa aaagaaaaaa gaaaacgtct gtttatattt tttgccaatt 002720 002721 ttgtaattgg gttgttttct tgctattgag ttgtttgcgt tccttatata tttaaaatac taacccctta tcagatgtat 002800 002801 ggtttgcaaa tattttcttc cattctcgag attttccctt cattccgttg attttttttc ctttgctttg cagatatttc 002880 002881 ctttttattt tgatataatc ccatttgtca gttttcattt tcatggcttg tgctttttgg ggtcatatcc aagaaatcat 002960 002961 ttaccagacc attgtcatat agcttttccc ctatgttttc ttctagtttt atagtttcag gtcttacatt taagtcttta 003040 003041 atttattttg agttgatttt tctgtatggt gtgaaacaag ggcctaaatt cattctgtat gtggatatcc agttgtccca 003120 003121 acctgtttat tgaagaagct gtcctttccc cgtgtcatgc tcttttcatc attgtcaaaa atcaattgtt ctgttttgtt 003200 003201 ctgtgtctgt ttgtgtgcta gcagcacact gttttgatta ctgtagcttt gtagtatatt ttgaagtcag gtagtgtcat 003280 003281 gcctcgagct ttgttctttt ttgctaaaga ttgctgggtc tattcaggac cttttgtgat ttcctaccaa ttttaggatt 003360 003361 gttttttcta tttctgtaaa aaagtgtcat taaatatttt ggtagggatt tcattgaatc tgtaggtcac tttgggtagt 003440 003441 atggacattt taacaatatt tcttccaatc catgaccaca agatattttt tctacttact tgtgttgtat tcagtttctt 003520 003521 tcatcagtgt tttttatttt tcagtgtata ggccttttac tctttggtta aatttatccc taagtatttt tatttttgta 003600 003601 ggtatatact atatatggga ttgttttatt gatttctttt ttggatagtt tgttgttatt gtatagaaat gctatggtat 003680 003681 tttgtatgtt gatttttgta tcctgcaact ttactgcatt tatttattca aataattttt ggtgatgtct ttagaggttt 003760 003761 ctatatataa aagatcatgt tatctacaaa cagcaacaat tttaacattt ctttctgttt agatgccttt tctttctttt 003840 003841 gcataattgc tgtggctagg atttctagta ACATCCTAAT ACTTTTTTTT TAACTTTGTA TTAGGTTAGA AAAGTGTACA 003920 003921 TAACTTACGT AAAATATTGC ATACATTATT AATTTAAGAA GCCTAGCTAT ATTTGCAAAT ATAGTGTACA TTCTGTGCAT 004000 004001 TATCTAGGGC TGCTGAGGAT TTTTTTATTA AAAAAAGGTA GATAATTTAG AAATTACTGA ATCTTTATAA ATCCCTAATA 004080 004081 ACTGTATTCA TTCTGTCTTG CAAAATTTTT ACTCTGTTTA CAGTGAATCA AAATTTATTT TCTAATCTTT TCATTAGAAG 004160 004161 TCTTTTGTTG TAGATGACTC AGGGCAAAAT AAgcaaacta gccctgaggt gtaatctagc ccattaccta tttttgtaaa 004240 004241 tatagtttta ctgggatata accaggtcca tttctcttac caggtatctg cggctgttgt actgaaatgg cagagttcag 004320 004321 tagttgtgac agagactgta ttgacaacag actcttaaat atgtcctatc tggcccttta tagaaaaagt ttgcTggctg 004400 004401 ggcgaggtgg ctcatgcctg taatcctagc actttgggag gccgaggcgg gtgtatcacg aggtcaggag atcgagacca 004480 004481 tcctggctaa cacggtgaaa ccccgtctct actaaaagta caaaaaatta gccgggcgtg gtggtgggcg cctgtagtcc 004560 004561 cagctacttg ggaggctgag gcgggagaat ggcgtgaacc tgggaggcgg agcttgcagt gagccaagat cgctccactg 004640 004641 cactccagcc tgggtgacag agcgagactc catctcacaa aaagaaaaaa aaaagagaaa GTTTGCTGAC CACGGCACTA 004720 004721 GATGATTAAA ATTTTTTTTT AAGTTGAAAT CAAATTAATC TGTGCTTTTT GTTTTAAAAT GGAAATTTGT CTTAAAAGTT 004800 004801 AAATGAAATT GCACATTTTC AATAAATAAT TTTGTCTAAT TGAGAATAAA TTCTTAGTCA TCTAAATCAT TCTTTTAAAA 004880 004881 GTATTTGAAA GATATATGGC ATTTAAAATT CTGCTGCTGT CTTATAAATA ACACATTTTG GTTATTTTCT ATAGGTTAGG 004960 004961 TCTTCTGAAT CATTAATGAG TGACCAGTGT CCATGTTTAT GCATTAAAGA ATTATGGGTT CTACTTATTC ATCTTCTAGA 005040 005041 CCACAGAAGT AAATGGTTTG TCTCGGAACC CTTATGTGGG TTTACAGACT GAGTTCATGT TACCTAGATT TTATTAAAAA 005120 005121 TTTCAAACCA ttgagcccag gatatcgagg atacagtgag ccaagattgt gccactgcac tccagcctgg atgacaaagc 005200 005201 aagaccctct cttgaaaaaa gaaaaaaaaa TTTCAAGGCA TTGAATTCTG GGTAGCCAAG AAAAATGGAT GGATGCCTAA 005280 005281 ACCCACATCT CCCTACATAA CCTTCCAACA AAATATAGAA CAGCAAAATC AAATATATCT ACTgttgact cttgaacaat 005360 005361 gtgggagtta gggatgctga ccgtcccccc aacatgcagt cagaaaactg catgtaactt ttgacttccc caaaaaacca 005440 005441 ttggtggcct actattgact gcaatcctta cccataacat aaagaaacaa ttaacatgta ttttgtatgt tgtatgtatt 005520 005521 atatacatga taaactagag aaaataaatg ttaagaaaac cataagagaa tatatattta cttctcatta agtggaagta 005600 005601 ggtcaccatg aaggtcttca tcctcatctt catgttgagt aggctaagga ggaggaggaa gaagaggagg ggttggtctt 005680 005681 gctgtcttcg gggtggtaga gatggaagaa aatccatgta taagcgcacc catgcatttc aaacccgtgt tgttcaaacg 005760 005761 tcagctgTAT ACAAAAACAT ACGTATTATA TAACTGCAAA TGGGAGTGCT TAGTACTGTC AGTTTTAAAA ACAGAAAACC 005840 005841 TCTAAAGCTC TTACCACGAG CCTTTCTAGC AAGGCAGGGC AGTCTGAGAA AAACTACTCT GAGAAGAGAA CTAACAGTGG 005920 005921 TTATAAAACT GCTTTAAAAT CATTGCCAGA ATGtgaagat actgaaaaag ttttcttgta gatcggagaa ctgataagaa 006000 006001 agaaacataa aagtgtccac atgacatgga gtttctgtag aaggcaaaaa tgaatcatgg tacccattgg tgattgggtg 006080 006081 gtgaagggca ccagaagaga aagcagaaaa tttagggtct taaaacacca ccaccaaaaa aagaataaat caaaggactc 006160 006161 ataccctctc ccaccaccaa aaaaaaagaa gaaagaaaag gaaaggaaat tcagtaaaga aatgggactt tggtgcattg 006240 006241 tcaaaagaag gtaaccctga attaagaatc ttttaagcta atcctaatct acaaaatgaa tggaatgaaa ctagaccatt 006320 006321 ataaacttac tagaagaaaa cagatttgat aacactttag ttgatggtac cctctccccc agaaacaacc ataaaacaga 006400 006401 agaaactgac aacactgtag attgaattag tttgtctgtt cagactacat ctgggagtat agaaaaacac cttgaataag 006480 006481 atactcaaat gttaaaaaca aatggacaga aaaccgggga tggatggaaa gaatacattc aatgcaggaa agaaatagga 006560 006561 agaggaaaat tatatccgta ttgactaaat tacaacatga ctgagggaga atagacttaa atgaaaattt aataaggggc 006640 006641 atagaagaaa ggttgaaaac aactaaggga ataaaaatga gataaatatg aagagagtga gaaaatggtt gagatggaag 006720 006721 gtaggcaagg aggaaataac tgtacatata aatgcaatcc ctagagaaga aaacagtgtg atatagctaa tattaaaaac 006800 006801 tataatcaaa ggaaacttcc cagaaataaa agatctaaat ctacgtattg aaagggtctg ctggataatt tgaaagatta 006880 006881 accccaagca atccacccga agacaagtct tactaaaact gtttcacttt aaacataaag gaaaaaatct ccaagtcctc 006960 006961 taggcacaaa gaccaaacaa cttataagag caaaataatt ttattggcac tagacttgca aagtcaactt aaaacaaggc 007040 007041 ctcaatgcag catttaaaat gactcaatga aaaagtgtga gccaaggatt ttgtaActtt gaccctagca atcccacttc 007120 007121 caggaattta ctctaaatgt gtaccctcca aaattaaaat gcatatgcat acgtttattt attgcagtat tgtttttata 007200 007201 atagtatagt agaaactaaa ttcttatata taaaagagta gttgaacaaa ccatggtata tctgtactct gaagtattat 007280 007281 tctgtattag tgtgtgttct ccagagaaac agccaatagg atatatagat atatatatat atataagatt tattataatg 007360 007361 aattggctcg cagagttatg gaggccaaga agtcccgaat ctgaggttgg caagctgaag acccagagga gctgatggta 007440 007441 tagtttccag tctcagtcca aaggtctgca aaccaggaaa gccaatggtg taatttccag tctgagtcca agtctgaagg 007520 007521 caggaaaaga acagtgtttc agtatgaagc acagggagtc ttctctaccc tcggaggact ttttgttgta ttcaggccac 007600 007601 taattgattg gatggcaccc acccatatta gagagggcca tctctttact cagcctacca attaaaatgt aactctcaac 007680 007681 gagaaaacct ttatagacac actcagaata atatttaacc aaatatcttg gcatcctgtg gcctgttcaa gttgacacat 007760 007761 aaaattaacc attctatttg tagttgtaca atagaatgag gaagatatct gaactgatac ggagtgagtt gcagaatgta 007840 007841 ttgttaaatg atagaaataa agttcaaaac tataggatga tgttaccttt tgtataagaa attaggaaaa aggcaatgtg 007920 007921 tgtgtgtgta tatatatgtg ttcaattgtg cacaaataaa tactggaaag acaaactatt gagattggtg ggtaaaaata 008000 008001 aagatgggtg ggtgaaaatg gagtggaagg gtttgatgta attatttggg tagttctgac tttagaatcg tgttaatgtt 008080 008081 ccacatgccc taaaattaaa tcaatctgta tgaaaggtgc actcaatgga atataacaga aacaactgaa cttaaatgta 008160 008161 ttttaaatga ataacactct ttgaggggat tggcaatgtt aacccaggta acttaagaat gtactatttt gacactatac 008240 008241 tataaggcta aagacaatca taaagaattg taaatactta ggagatttgt tttttacatt gttatgtgag gattagcaat 008320 008321 tttaaatcta ttatatttgt attcttggac tggacaaatt aataaataca ttgtgggtaa |
Predicted Small Protein
Name | NONHSAT114079_smProtein_2798:3013 |
Length | 72 |
Molecular weight | 8451.9268 |
Aromaticity | 0.253521126761 |
Instability index | 48.1085915493 |
Isoelectric point | 6.99053955078 |
Runs | 14 |
Runs residual | 0.048628613788 |
Runs probability | 0.0329699447347 |
Amino acid sequence | MVCKYFLPFSRFSLHSVDFFSFALQIFPFYFDIIPFVSFHFHGLCFLGSYPRNHLPDHCH IAFPLCFLLVL |
Secondary structure | LEEEEELLLLLLLLLLHHHHHHHHHHLLHHHHEELEEEELLLLEEELLLLLLLLLLLHHH HHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHH HHHHHHHHHHH |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooooooooooTTTTTTT TTTTTTTTTTT |