NONHSAT114110
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114110 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3898 nt |
Genomic location |
chr6-:99344608..99395882 |
Exon number |
5 |
Exons |
99344608..99347357,99353302..99353546,99374353..99374936,99375581..99375698,99395682..99395882 |
Genome context |
|
Sequence |
000001 ctcctccccg gctccgcccc gccTCCCCGG GCCCGCCGCT CCTCGCGGCC TCCGCGTCTT CCTTCCGGGT CGCGCTAGGC 000080
000081 CGGGCTTGCG GCGGTTGTGC CGCATCTAGA GAGTCGGGGA GCCGCCCCCG CACCCAGGCC TTCTCGCGCT GCCTGGTCGC 000160 000161 TGGTGAAGCC CGCGGCGCGC GCCTCTCCCG GACCCTGCAG GGTAAAAGAA TGTCACATGT CAGCATTTGT ACCTGAAGTC 000240 000241 AGCATGCAAA GTTCAGGGTA CCTGGATGAA TGCCAACTTT TGCATTTCCC ATGTGTATCC TGTGACCATT CTATCTGGGA 000320 000321 ACATCCTTCA AAGAGTTCAT GCATCTTACT GAGGACACCT GACCTTTTGA AGCTTCATAA TTCACATCTA GATGTCACCG 000400 000401 GTCTTTCCCA TGTTAACAGT TCTGACCATG TTTTATTATA TATGCCTTCG GCGCCGAGCC AGGACAGCTA CAAGAGGAGA 000480 000481 AATGATGAAC ACCCATAGAG CTATAGAATC AAACAGCCAG ACTTCCCCTC TCAATGCAGA GGTAGTCCAG TATGCCAAAG 000560 000561 AAGTAGTGGA TTTCAGTTCC CATTATGGAA GTGAGAATAG TATGTCCTAT ACTATGTGGA ATTTGGCTGG TGTACCAAAT 000640 000641 GTATTCCCAA GTTCTGGTGA CTTTACTCAG ACAGCTGTGT TTCGAACTTA TGGGACATGG TGGGATCAGT GTCCTAGTGC 000720 000721 TTCCTTGCCA TTCAAGAGGA CGCCACCTAA TTTTCAGAGC CAGGACTATG TGGAACTTAC TTTTGAACAA CAGGTGTATC 000800 000801 CTACAGCTGT ACATGTTCTA GAAACCTATC ATCCCGGAGC AGTCATTAGA ATTCTCGCTT GTTCTGCAAA TCCTTATTCC 000880 000881 CCAAATCCAC CAGCTGAAGT AAGCTTATTC AGCTGATTCT GAATCATCTT ACACTACCAG ACCTGTGTAG ATTAGCACAG 000960 000961 ACTTGCAAAC TACTGAGCCA GCATTGCTGT GATCCTCTGC AATACATCCA CCTCAATCTG CAACCATACT GGGCAAAACT 001040 001041 AGATGACACT TCTCTGGAAT TTCTACAGTC TCGCTGCACT CTTGTCCAGT GGCTTAATTT ATCTTGGACT GGCAATAGAG 001120 001121 GCTTCATCTC TGTTGCAGGA TTTAGCAGGT TTCTGAAGGT TTGTGGATCC GAATTAGTAC GCCTTGAATT GTCTTGCAGC 001200 001201 CACTTTCTTA ATGAAACTTG CTTAGAAGTT ATTTCTGAGA TGTGTCCAAA TCTACAGGCC TTAAATCTCT CCTCCTGTGA 001280 001281 TAAGCTACCA CCTCAAGCTT TCAACCACAT TGCCAAGTTA TGCAGCCTTA AACGACTTGT TCTCTATCGA ACAAAAGTAG 001360 001361 AGGTGAGAGT AATTCATAAT TTTCATCATT GCTATTATGG TAGCCAACTG AAGATTTGGT TTTCTGTAAT TGCTCATAAT 001440 001441 AATGTGTTTT TTATTTTTAA ATCAAGTTTA TGATGCCTTC TGACTACTCT GAAATCAATA GAGCTGATTC AGTCATTGTG 001520 001521 AAGTTATTTC AAACCTAATA TGCTTTTAAA TTATAAGGAA ATGTTCTTCT CTATGCTCTT AAAATTTTTG TGATGCTATT 001600 001601 TATGTCCCCA GGAAAAAAAA TAAGCGTTGG TTGAGGTAAG CCAAAATGCT GGCAGGGAAT GAATTAGAGA AAGGTAGGAG 001680 001681 GATAATATGT AAGAGGACAT TTGCTTGCAG TGGGAGGAAG CAAAGTGATA TTTATCCTGG ACCAGACTTG GGGGTTAAAA 001760 001761 TTTGTAATAC CATAGTTAAT GAGTCTCATT TAaaaaggaa tcatgtcata tatattagtc tacttgcttt ttcactaata 001840 001841 tctctaggac atgtttccag ggtcagtgca tatattatct aactctttta ctgtaatagt gtatgttata ccataatcta 001920 001921 tttaacattc tccaaatgat caacatttag tttttccagt tgttttcctt ttacaaacta cctagcacta acattcttct 002000 002001 gtgcatagtt ttttttttct tttttgagac ggagtctcac tctgttgccc aggctggagt gcaatggcat ggtctcagct 002080 002081 cactgaaacc tccgcctgac cagttcaagc gattctcctg cctcagcctc ctgagtatct gggattacag gcacgtgcca 002160 002161 ccatgcccag ctaatttttg tatttttagt agagacgggg tttcaccatg agcctgtgca tggttttaca catacttact 002240 002241 attactgctg ttggatagag tcctagaggt ggtattgcta ggttaaagag tatgtacctg ggcccctgta gtacatactg 002320 002321 TTTGTCATAT Actttttccc tctgctgcat gcatattggc cttctttcta ttccttgaat gttctgacct ggtcccagct 002400 002401 cagggctttt gtttttttgc ctgtctggaa tgtttgtcta gctcattatg gctgcccttt tttcagctca gtgttcaact 002480 002481 tgcatatttt tttagagatg gcttcctgga tactgtagca ccccttctag tttgtttcct tcatatcatc aagtttcatt 002560 002561 tcctttttaa catccttgtc actctctgaa atgatacttg ttttcttgct tattttctgt cttctcacat taggatataa 002640 002641 tggtagaagc cttgttggtc tttttcattg ccatatttcc agaatctaga atagtacttg gtaaagattg gccattcagt 002720 002721 aaatatttgt taagtaaatg aatAAAGATA ACCAAATTAC TTTTCCAAAA TGATATACCA GTGActtggg agactggatt 002800 002801 agttctggtg ggaatggttt ggttcccaag agagcaggtg gttgtaaagc aaggatgcct tttgtgtttg gcctctttgt 002880 002881 actgtctgcc tcccctttga tcttctgcca tgttaagaca cagcaggaaa gcccttacca gaagccgagc agatgacagt 002960 002961 gccatgcccc ttgaaattcc cagcctccat acctgtgagc taaataaact ctttttcttt atcagctacc caccctcagg 003040 003041 tattttgtta tagcaacacc gaatgaatta agaTGGCATT ATTCTCAATT TTGGGCAAAA TATTTAGCTA GGCTTCAACA 003120 003121 GGTGACCTGg cagggtggaa agaagacttt gattctagtt ctagccctgc cagcaataag cttggtaatc taggtgaaga 003200 003201 cattgtctca gatttccaga ttttttattt gtaaaatgaa ataattattg tccctgAATG CCAGATGATA TTAGCCTGTG 003280 003281 TTTTCATTGG TCTGTGGTGA AATGACTCCC CATTTGTGTG GGTATAAAAT TGCTAGCTAT CTTTTCTTGG GTAGGACTGT 003360 003361 TCATTCTGAA ATTATGCCAT ACCTGCTTTT TACTGGCACA TTTACTATTT TATGGGCCTA AGTACTATAA ACGAAATCCT 003440 003441 CTGAGCAAGG AGGATTTAAA TGCCTCATTT AAAATTTTCT GATTGTTTAA TAAGAAATAT AGCAGGCATA ATTATTAAAT 003520 003521 GTAGTTATTA AATGAGCCTT TGAGAAGAAA AATAGGGTAA AAACCAAAAA AATATTAACT TGCTAGGCAT CTTATATCTA 003600 003601 TTGTGGCTTG TGAAAATATA TCCCATGAGA TGTTTTTGAA ATGTTGTATA GTAATGTGAT CTAAGTGTCA GAGAATTATT 003680 003681 AGTCTACAGT TTTCTTAAAT TTGTTTCAGA CTGATAGATA TGACCAAATT TTTTAAGTGT GATTTATGAG GATTAAGAAG 003760 003761 ATTTCATATC TGAAGAGTGG AAATTTATAC ATATGTACCT AGGTCTAGAT AGCATAAGCT CTGGTTTCCC TCAGTTACTT 003840 003841 AAATACAGAT GTAAAATCAT TGTATGAATA TATTAAATAA AATTTAGGTT GTACCCTC |
Predicted Small Protein
Name | NONHSAT114110_smProtein_584:820 |
Length | 79 |
Molecular weight | 9195.1721 |
Aromaticity | 0.102564102564 |
Instability index | 44.1974358974 |
Isoelectric point | 9.34576416016 |
Runs | 12 |
Runs residual | 0.0201688555347 |
Runs probability | 0.0353073661897 |
Amino acid sequence | MEVRIVCPILCGIWLVYQMYSQVLVTLLRQLCFELMGHGGISVLVLPCHSRGRHLIFRAR TMWNLLLNNRCILQLYMF |
Secondary structure | LEEEEEELLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLEEEEEELLLLLLLEEEHHHH HHHHHHHHLLHHHHHHLL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLLLLLLLLLLLLLL |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTTTTTTTTTToooooooooo oooooooooooooooooo |