NONHSAT114756
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114756 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2433 nt |
Genomic location |
chr6-:122757934..122760368 |
Exon number |
1 |
Exons |
122757934..122760368 |
Genome context |
|
Sequence |
000001 GAGGTTCTCT GTGAGGGCTC CATCTCTGCA GCAGGCTTCT GCCTGGTTAC TCAGGCTTTC TCATACATCC TCTGAAATCT 000080
000081 AGGTGGAGGT TGCCAAACCT CCTTCACCCT TGCACTCTCC ACACCTGCAG GCTTAACAAC ACGTGTTAGC CACCAAGGCT 000160 000161 TATGGCTTGT GCCCTGCACA AGTGGCACCC CATGCCTTAC TTGGGCCCTT TAGAGCTGAG CAGTGTCCCA AGGCTGGGCA 000240 000241 GCCCCTTCTC TATGGCTGCT TTTACATTTT TTTCTTTCAT TTCAACCTTG GAAAATCTTA TGCCTATGTG CCTCAGGTAT 000320 000321 GGTCTTCTTG TGAAGTATCT CCCAGGGCAT TTCCTCAGTT TGAATGTTGG CCATTCTAGT GAGGTTGGGG AAATTTCATG 000400 000401 AACAATATCC TGAAATATGT TTTCCACGTT GCTTGCTTTC TTCCCCTTTG GTTTCCTTTA CATAATCCCC TATTTCTTGG 000480 000481 AGGTTTTGTT CATTCTTTTT GTTTTAGTTC AGTGAGCCAA TCTTTGAGCT CTGAGATTCT TTTCTCAGCT TGGTCTATTC 000560 000561 TGCTGGTAAT ACTCGTGATT GCATTATGAA ATTCTTGTAG TGTCTTTTTC AGCTCTATCA GATCAGTTTG GTTCTTTCTT 000640 000641 ATAATGCCCA TTTCATCTAT CAGCTTCTGT ATCATTTTAT TGTAATCCTT AGATTTCTTG GATTGGGTTT TGACTTTTCT 000720 000721 CCTGAATCTC GATGATTTTT GTTCCTATCC ATATTCTGAA TTCTACTTCT GTCATTTCAG CCATTTCAGC CTGGTTAAGA 000800 000801 ACCCTTGCTG GGGCACTAGG GTGGTTGTTT GGAGGAAGAG ACTCTGGCTT TTCAAGTAGC TATATAGCAA TGCTCCACTC 000880 000881 CTCAGTACCA ATTTTCTGTG GCAGGCCATC CTTATATTGC AAAAAATACC TGAGGCTGGG TAATATATAA AGAGGCTTAA 000960 000961 TTGGCTTATG GTTCTATAGG CTGTACAAGC AGCACAGTCC CAGGCATCTG CTCAGCTTCC GGTGAGGCCT CGGAAAGCTT 001040 001041 ACAATCATGG CGGAAGGCAA AGGAACCCGA TGTCTCACAT AGTGAGAATC AAGAGTAAGA GAGAGTGAAG GAAGAAGCCA 001120 001121 TATACTTGTA AACAGGCAAA CCTCATGAGC ACGCACCATC ACAAGGACAG CATCAAGTGG ATGGGGCTAA ACCATTCATG 001200 001201 AGAAATCTGC ACCAATGATG CAGTCACCTC CTACCAGGTT CCACCTCCAG CACTGGAAAT TACAATTCAA CAAGAGAGTT 001280 001281 AGAGGGGTCA ACTTCCAAAC TATATCATTC TCCCTGCAGT TCTATCAGTT TTTGCCTCAT GTATCCTGAT CCTCTGTTCT 001360 001361 TGGGTGCATA CATGTTAAGG ATAGTCATGT CTTCTTGGAG AATGGACCCC TTTCATCATT ATCCCTGATA GTAATTCTTG 001440 001441 CTGTATAGTC TGCTATTCTA TAATATACCT ATTTCTTCAT TTTGGTTAGT GTTAGCCTGG CATATTTTTC TCTCTTTAAT 001520 001521 TTGTATGTCT CTTTACATTT CAAGTGGGTT GCTTGTAACC AACATATAAT TGGGTTTTGT TCTTTGATCC TGCTTTGACA 001600 001601 ATTTTTTCTT TTTTAAACTG GCCCAGTTTT TCCATATAAT AATCTATCTT TTAATTGGTA CATTTACACC CTTGACATTC 001680 001681 AAAGTATTTA TATATTTGGA TAAACATCTA CCATAATGTT ACTGTTTTCT ATTTGTTAAC CTTGTTCTTT ATTCCTATTT 001760 001761 TTGTCTTCCA TTCGTCTTGT GCCTTTGATG GTGTTAATTT GGCATTTTAT TATTCTCTCT TCTAGCGTGG TTTTCTTGTG 001840 001841 GTTGCCCTTG TGTTTGCAGT ATAGATTTAC AAATAATGCA ACCCCTCTTT CAAATAATAA TATACTGCTT CTTGGGCAGT 001920 001921 GTACCTTATA GTAACAAAAT AATCCTAATT TCTCTTTCCT ATCCCATGTA TCATTGCTGT CATTCCACTT ACATATAAGC 002000 002001 ACCCCTAAGT ATGACGACTA TACACACACA CACACACACA CACACACAAA TATATGTGTA CAAAATCAAA TACATTGTTG 002080 002081 CCATTATTTT GAATGAACTG TTAACTGTTA GATTAAGAAT TGGTACCATA TGGAACAGGT TAGTGGAACT TACTATAAAA 002160 002161 GGCTTTTCTT TGGGGGAAAT TTTTAATTAC TGAAACTATT TAGGAGCTGT GGGATTACAT GTCTATCTTC AATTAGTTTG 002240 002241 AGTAAAATAC TCGTAGTAAT TTGTGTATTT TGTCAGTTTT CAAATGAATT GTTCATAATA TCCTCACATT TTCAAATTTC 002320 002321 AACTGCGTTT ATAAAATTTT CATTTTTCCA TTCTCTATTT GTGTCTTCTT GCTCGATCTT ACCAAAATAT TTTGTTTTAG 002400 002401 TGCTTTTTCA ATAAACAAGT TCTGGCTTAT TTT |
Predicted Small Protein
Name | NONHSAT114756_smProtein_161:400 |
Length | 80 |
Molecular weight | 8774.2824 |
Aromaticity | 0.126582278481 |
Instability index | 54.7063291139 |
Isoelectric point | 6.88787841797 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0396251866841 |
Amino acid sequence | MACALHKWHPMPYLGPLELSSVPRLGSPFSMAAFTFFSFISTLENLMPMCLRYGLLVKYL PGHFLSLNVGHSSEVGEIS |
Secondary structure | LLHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHL LLLEEEELLLLLLLLLEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii iiiiiiiiiiiiiiiiiii |