NONHSAT114763
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114763 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3244 nt |
Genomic location |
chr6+:123390819..123394062 |
Exon number |
1 |
Exons |
123390819..123394062 |
Genome context |
|
Sequence |
000001 AGAAAAAGCC AGAGATATTG TCTCCACTCT CGTTACAAAA AAGTGCGTTC CTTCTTCAGG AGGATCGAGT AGAAAATATT 000080
000081 TTCTACTCGA AGAGGCCATG GGGAAGTGAT GGTCAAATCT CTGTTGTGAA GCAAGTTTCC ACACAGAAAC ATCATCAAAA 000160 000161 ACACGTACCT CTGAGCATCA CTTCTTTCTC TAAAAATAAA AATAAATATG CTGTTTTCCT CCCTTTTTTC TAATTGGCAT 000240 000241 CATAAAAGTA TAAGAAGCCA CAAATGCATT GTTGCCACTT AAGAAAAAAA TCCTATGTTA TACATATATG AACATAATTC 000320 000321 ACTTAGTTGC ATATGATTGA AATATTTGCA TGCTGGTTTA TAAATTATTA CCTAAAAGTT TTATGAAATA TAATTATTAA 000400 000401 GTTTTAGTGC TAGAAAAATT GTTGTTTTTT GTGTTTTGTA TTCATAGGGA AGACTAGTAA TAtcccttac tcctcattca 000480 000481 tatagctaac aattttaatt ggatggctaa tggatatggc ggatttaaca tttacaaaac caaactactt tcactctgac 000560 000561 cctgcttccc ctttagcctt ctcatctcac tatgtgtcga ccccaatctt ccagtttcta ggaataaaaa ttttggagtc 000640 000641 atcctctctt tccttcctct ttttctttca aaactacatc acatcagcta gctcatgctg ttgggtcttc aaaatatatc 000720 000721 cacactctaa ccacttctcc aatcttcttc actgtattgg accaagtctt caacattttc catctggaat attttaataa 000800 000801 tctaaaaact agtcttcttg cttccagagt caattttcaa cacattagca agagtgagtc tcttaaaatg taactcagac 000880 000881 cattttgttc tccaaaccct ctgaaagagt aaaagccgat gtctttatat cagtgtatga gaagtcttga tatgaAGGCA 000960 000961 GTAAGCACCA GTACAGCAAC ATAGCATGGT TTCTGATTGG GCTGGCATTT TTGCTGGTAC TATGAAAAAA TAGTTGTTAA 001040 001041 ATACTTTAAT TTCTTGCTTC TGAAGTTCtc taccccgttc ttgccttttc ttagataatc tcttaagaat ctctccttta 001120 001121 tttactgctg ccaaactgtc atctttgctg ttccaggaac ttgctaagca tgcctctacc tcaggacttt cgcatttctg 001200 001201 ttccctttgc ctctaatttc agatatccac gtggtttatt ccctcatctt cttcaggtat ttgcttaaat gtcatcttct 001280 001281 ttgtgaggac tctctttcct aattttagat gaaacagccc tgtggttctt catattctcc tttcctgctg tatttcctct 001360 001361 ccatagcatt tatcacctga tacaccatac agattattta tttactttgc atttcccccc aatagcaatg tgaactccac 001440 001441 aagggcagga atttttgtct gtttactact gcattactgg tgccttgtac agtccctgga acttaACAAA TCCAAAATGA 001520 001521 TTTCATGAGG ATCCTAATTT GTTTCAGCAA GTTATGTAAC GGCCAATAGT ATGAATTGAA AGAGTTTCTT GTTGTCTTAA 001600 001601 TTTAAAAAAT TTTGTTATTT ATCTTCAAAG GGGAAATTTT ACCCTCTCAT GATAATAGAA TCATGAATCA AAAATGATAT 001680 001681 CCTCTTCTCC CCAATTGTGA TCTCTATCCC TGAGCCTAAG TTTTACATCA GTATTTCAGT TTTGTCTTTA GAAGTTACTC 001760 001761 AACGATCACT GGACCCTATA TCTATCCACA TGGCTTACTC TTGGAGAGAC TACAAGATAG CTCAGGGGAA AAGTCATTTT 001840 001841 GAGATTAAAA CTACATGGAA TTGTTCTTTA TGGATTATCA TGGTTAATTT CAATTTTTAA AAATATGCAG GAAGTTAAAA 001920 001921 GACTATAATT CCAGTATTGG AAGCCAGTTT AAGAGAATAT GACTATGTAG TTACTTTTAA TGGAAAGGGG AAGAAGAGGA 002000 002001 AGAAAAAGGA AAGACATTGT GTTCGTATCT TCTCTGCAAC AATTATAAAA TGAATGAGGA AGTATTTTGG TGTTTCTAAG 002080 002081 GTCTTTCCAT GATCTTGAAA TCTATATATT ATAGTCATTT AGTCTGTGAA CCATTTTAAC AATTGGGTTT CATGTTACAT 002160 002161 ATCTTTAAAT TTTTATGTTG AAAATTTATA GCTGTGACAC AAGATGATAG AAATTGCTCA TGCTCACATA TATTCCAACT 002240 002241 GGCTTTTCAG CTTGCTCCCT TCTCTTTTAA TTTCAGCTAT CATTTTTAGA GCCTTACAGT CACAATTGTT CTTAACTATC 002320 002321 CCAAATTTTT ATTTCCTATT TGGACTGACT TCTCCATAAT TTTAGTAACT AAATGACCTA GATATTGGTT CTTGTTGTGA 002400 002401 TAGGTTTCTG ATTTGTATCC TTTGCAGTTT AACTTTTAAT CCTTACCAAA CATATGTTAT TCCTTTTCTT CAGCTACATT 002480 002481 GTTGTGCCTT TCCCAACACT GTAATAATTT AAGCCTCCTG TTTTATAATC TTCTATCAGA ACATATATTA AGAAGACACT 002560 002561 GAATTTAAAG AATCAGCAGG TGATGTTGAA GAAGAAATAT AACCTGAAAT ATAAGAATAG ATGTTTGAAA CTGTTTCAGA 002640 002641 AGTTAACCAG TCTTTTAGTG GCTTTGTAAT GGGTAGGGGT TTTATTCCTC TTTGTGTGCT ATGTAGGACA TTGTTAACCA 002720 002721 ATATAGATTA TGTTTCTTGT CAGTTACACA AGGATAGGTA ATCAGGGTTA ACAGTTCGGA AAACATTCTC TAGAGAAGAG 002800 002801 ACTAATGATT CTTGCTCACA AACAAGGCAG AATTTCCTTA TGTTTCTTAA TATTTGATCC TTGATAGTCT GTACAGTGGA 002880 002881 AACCATTTCC CTCTGTGATA TCCTTTTTTG CCAACCTATA TGAATGTGTT TAGCGTCACT TCAGATATAG AGTTCAAGCT 002960 002961 CAAGTATACA CAGCACATGA AAGATCCTAT AGTTCATGTT CTCTTAGGTT GAATTTTCTT TTCATAATTT TTTATGATTG 003040 003041 AATTCTAAGG GTATGTTCCT TGGTAAATTG TGTTAATTAT GTCCACTTTA TAATGGATTT AACAATTTTA CAAAGCAGAT 003120 003121 CATTGTTTAT TATATTCTGA AAACCattat attaatattt tatttctttt tttGCAGAGA AACTATTGTC TTTTTTGATT 003200 003201 TCTGAGGATG AATGAAGTAC TGTTAAATAA AATGTCACTA AATG |
Predicted Small Protein
Name | NONHSAT114763_smProtein_509:796 |
Length | 96 |
Molecular weight | 10806.2329 |
Aromaticity | 0.189473684211 |
Instability index | 41.0631578947 |
Isoelectric point | 6.55560302734 |
Runs | 13 |
Runs residual | 0.00779113137174 |
Runs probability | 0.0694427459134 |
Amino acid sequence | MDMADLTFTKPNYFHSDPASPLAFSSHYVSTPIFQFLGIKILESSSLSFLFFFQNYITSA SSCCWVFKIYPHSNHFSNLLHCIGPSLQHFPSGIF |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLHHHHHLLEEEEELLLHHHHHHHHHHHHLL LLLEEEEEEELLLLHHHHHHHHLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTo ooooooooooooooooooooooooooooooooooo |