NONHSAT114770
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT114770 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3628 nt |
Genomic location |
chr6+:123760739..123793998 |
Exon number |
4 |
Exons |
123760739..123760922,123783392..123783503,123789961..123790075,123790782..123793998 |
Genome context |
|
Sequence |
000001 TGCACCCAGA GGTTGCAGTA AGTCTGGATG CCACATCAAA CTGTTTGTGG TACTTCTAAA CTTCGTGGAA GAGCCCTGTT 000080
000081 TCATAAATCT GAGACAGCCT TGGTCTGAGG GAGCAAAGAC AGAGAATTCA CGTGCTGCCC AGGCATAGCC ACATAGCAGG 000160 000161 TGGACATCCC TGGACACTTT TCTGACAAAG CACGCAATGT GGGGACAACA CAGAAATCCA AGAAAGGCAA GACCAATTTC 000240 000241 AAGGCACTAA ATAAGTGGAC TGAGACAAGA AGTACACAGA TACTTCCCAG AACAAAACCC TCATTGGATT TTCCTGGAAG 000320 000321 TACGGAGAGT TACATCCAGA GAACTCTGAA CATTTTGGAA GGACCCCAAT CCTGCAAACA ATGAATGGCA ATAAATCCTG 000400 000401 GGACTGGAAA GGGGCTTCTC AACCCCAAGG CAACCATAAA GTCCTATACA AAGAAAGATA CAGCAGTGTG AAAGAGGCCT 000480 000481 GGATGAaaaa acaaagacag agccagtgag ccagagccag agccagagga caagagagaa aggcagagaa tggaaaacac 000560 000561 agacagagaa ggcagatgcg tagagagaca gagattcaat gagaaaataa ggaaggaaga aagaaagaaa acaaaaaCGT 000640 000641 TCTCAGCACT ACAACTTCTG CCTTGTTCTG TTCCAGAACA GTATGAGCTC AGTACTTTTT CAGACTCTCA ATTTTCTACA 000720 000721 ACTAATAATT TGCTCTTTCA GTTAGTGGCA AAGGCTTAAC GACAAAGGTT CATCTTTAAT ATTAGAGAGG CACTTTTAAA 000800 000801 ATTTATGATG CTAAGCCTTT TGTTCTGGAT ATGGTATGTT GCACAGGTCT AGGGACTGGG ATTTCAGATG TCTATTCCGT 000880 000881 ACCCTTATTC TTTTATTTAT TAAATCTTTT AGTGTGTATT TTTTTCTATT TTCTCTTCTT TTATTAGTAT GTATTTCTTG 000960 000961 AGTCATTAAC ATACAACATA TATAGGACTT CCTctgagga tacaataatg tatatgatgg acaagatacg taaaagtgcc 001040 001041 ttgaagagac ttggtcttgt gaggggacag acaggaaaca ggcaattatc acctaactta ggtctgttgt ttcaaggtaa 001120 001121 aataagaata ataacatctg tgttggctgg gatgttgtga gtgtttgtgg agataatagt acaaatgaaa ttactGAGGG 001200 001201 ACAATGGTGA AGATAGGGCC ATAtcatgga gcttacacta gtgatggaag gagatgggag atacaaaagc aagtcaatat 001280 001281 ttcagatttc gtaaatgaat ggcaagcata gagcagtgag gcagagaatg actggagaaa gagactatgt taaactggat 001360 001361 agtaaaggaa gAGCAGGACC CCACTAAACT ATATGGAGTT TTGTGCAAAT CACATGAACA cacgtagaac attttaggct 001440 001441 gctcatgtga ctttggattt gtcctaaggg caatagtaag cctttgaact gctttagcat gataggattt taaaagatca 001520 001521 ctggctgctg tgtgaacaaa aataatgttg taaagaaaag gatattagct gtatcagatc agctggagac tactgaaata 001600 001601 acccaagctg gcttggacta cataggagta gtgTAAACTC attcattcat gcaagaaata cttactgagt gcctactcag 001680 001681 taccagaccc ttttctagga catggagtta tagcagtgaa caatatagaa aaaaatcccc gaattcatgg agactccagt 001760 001761 gagcagagac aaaaaaatag caactaaata agttaaaagg aattgagtac cctataaaag tttatcaggg aaatgttata 001840 001841 aggaatgact ttcggagtaa tgggtagtga tcttaaatgt atggtcaatg aaaatcAgaa gttgtagaga agtggataaa 001920 001921 ttcacagtac gttttaaagt agacctaata agacttaatg aatttgatgt ggcaagtgag aaaaatacat caaggatgat 002000 002001 gacttttata atttgacttg agtatctggg aACAAACAAG TACAGTGCCA TAATAAGGGC AGAAAATTTT CCATTCACTC 002080 002081 AGCAACTTAT GAACTCATTT GCTTAGTCTT TATTGCCTCT TGCATTATGT AGTTTTCACT TTGCTGGAGT ACTTGTATAG 002160 002161 AAGATCACCA GTGAAGAAGC CAGAGATGGT TTATTTGGTC ATCCCAATAA TACATCTTAT TGTTAATTAA CTCTCAAGGG 002240 002241 TTTTTTTTCA CAATTTTAGA AAAGGTTTAA GCAAATGAAT TATTTAACAT GAATTGGCTA TGTGACCCTA CTATAAGGTG 002320 002321 TTTAAAACAC CAACAGCTTA AACTTCTTAG ATCAAAGGAC ATCCTCCAGG CCAAAATGTT TCCACTGGAA CGGTTTCTTT 002400 002401 GCTTCCTGAT TAAAAGCTTC CCTAATATAT TTCCACGTGT TATTACATAT TTTCGTATTC ACTTTGATGG AAAGCAAGAA 002480 002481 TAGCAGCCAA ATACATATTT CATGCATTCT TTTGATTAAA AATGATAAAG GTAATATTAG TGTTTTTTTC TTTCTCACCT 002560 002561 CCAATTTATG AAGTGGAAAT AATTTTCCAT GGAATGGCCA ACTAAAGAAA AGAAATATGA TAAATTCAGA TCATATCATT 002640 002641 GTTCCATTTA TCCTTGTACC CTGTCTGTGA CAGAATACCT GATGTTTGGG ATATAACAAA AATAGATGca tagaatcata 002720 002721 gagtttaaga atgtaaaaga cttttgaaat cagccattct aataccctaa tttttaagat agacaaaaaa tggtctccgg 002800 002801 aaggataaat agtctaacaa aggtcatgca ttgagAACAA ACCTAATATg agccaagatg gccgaatagg aacagctcca 002880 002881 gtctacagct cccagcgtga gcgacgcaga agacgggtga tttctgcatt tccatctgag gtaccgggtt catctcacta 002960 002961 gggaatgcca gacagtgggc gcaggtcagt gggtgcgcgc accgtgcgca agccaaagca gggggaggca ttgcctcagt 003040 003041 cgggaagtgc aaggggtcag ggagttcccc ttccgagtca aagaaagggg tgacggacag cacctggaaa atcgggtcac 003120 003121 tcccacccga atactgcgct tttccgacag gcttaaaaaa cggcgcacca caagattata tcccacacct ggctcggagg 003200 003201 gtcctacgcc cacggaatct cgctgattgc tagcacagca gtctgagatc aaactgtaag gcggcagcaa ggctggggga 003280 003281 ggggcgcccg ccattgccca ggctttctta ggaaaacaaa gcagccggga agctcgaact gggtggagcc caccacagct 003360 003361 caaggaggcc tgactgcctc tgtaggctcc acctctgggg gcagggcaca gacaaacaaa aagacagcag taacctctgc 003440 003441 agacttaaat gtccctgtct gacagctttg aagagagcag tggctctccc agcacgcagc tggagatctg agaacgggca 003520 003521 gagaacgggc agactgcctt ctcaagtggg tccctgaccc ctgacccccg agcagcctaa ctgggaggca accccccagc 003600 003601 aggggcacac tgacacctca cacggcag |
Predicted Small Protein
Name | NONHSAT114770_smProtein_2288:2482 |
Length | 65 |
Molecular weight | 7827.3362 |
Aromaticity | 0.140625 |
Instability index | 59.2734375 |
Isoelectric point | 9.73016357422 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0722222222223 |
Amino acid sequence | MNWLCDPTIRCLKHQQLKLLRSKDILQAKMFPLERFLCFLIKSFPNIFPRVITYFRIHFD GKQE |
Secondary structure | LLLLLLLHHHHHHHHHHHHHLLLHHHHHHLLLHHHHHHHHHHHLLLLLHHHEEEEEEEEL LLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooo oooo |