NONHSAT114771
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114771 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3532 nt |
Genomic location |
chr6+:123760739..123793998 |
Exon number |
3 |
Exons |
123760739..123760922,123789945..123790075,123790782..123793998 |
Genome context |
|
Sequence |
000001 TGCACCCAGA GGTTGCAGTA AGTCTGGATG CCACATCAAA CTGTTTGTGG TACTTCTAAA CTTCGTGGAA GAGCCCTGTT 000080
000081 TCATAAATCT GAGACAGCCT TGGTCTGAGG GAGCAAAGAC AGAGAATTCA CGTGCTGCCC AGGCATAGCC ACATAGCAGG 000160 000161 TGGACATCCC TGGACACTTT TCTGAGATTT TATGTCATAG ACCCTCATTG GATTTTCCTG GAAGTACGGA GAGTTACATC 000240 000241 CAGAGAACTC TGAACATTTT GGAAGGACCC CAATCCTGCA AACAATGAAT GGCAATAAAT CCTGGGACTG GAAAGGGGCT 000320 000321 TCTCAACCCC AAGGCAACCA TAAAGTCCTA TACAAAGAAA GATACAGCAG TGTGAAAGAG GCCTGGATGA aaaaacaaag 000400 000401 acagagccag tgagccagag ccagagccag aggacaagag agaaaggcag agaatggaaa acacagacag agaaggcaga 000480 000481 tgcgtagaga gacagagatt caatgagaaa ataaggaagg aagaaagaaa gaaaacaaaa aCGTTCTCAG CACTACAACT 000560 000561 TCTGCCTTGT TCTGTTCCAG AACAGTATGA GCTCAGTACT TTTTCAGACT CTCAATTTTC TACAACTAAT AATTTGCTCT 000640 000641 TTCAGTTAGT GGCAAAGGCT TAACGACAAA GGTTCATCTT TAATATTAGA GAGGCACTTT TAAAATTTAT GATGCTAAGC 000720 000721 CTTTTGTTCT GGATATGGTA TGTTGCACAG GTCTAGGGAC TGGGATTTCA GATGTCTATT CCGTACCCTT ATTCTTTTAT 000800 000801 TTATTAAATC TTTTAGTGTG TATTTTTTTC TATTTTCTCT TCTTTTATTA GTATGTATTT CTTGAGTCAT TAACATACAA 000880 000881 CATATATAGG ACTTCCTctg aggatacaat aatgtatatg atggacaaga tacgtaaaag tgccttgaag agacttggtc 000960 000961 ttgtgagggg acagacagga aacaggcaat tatcacctaa cttaggtctg ttgtttcaag gtaaaataag aataataaca 001040 001041 tctgtgttgg ctgggatgtt gtgagtgttt gtggagataa tagtacaaat gaaattactG AGGGACAATG GTGAAGATAG 001120 001121 GGCCATAtca tggagcttac actagtgatg gaaggagatg ggagatacaa aagcaagtca atatttcaga tttcgtaaat 001200 001201 gaatggcaag catagagcag tgaggcagag aatgactgga gaaagagact atgttaaact ggatagtaaa ggaagAGCAG 001280 001281 GACCCCACTA AACTATATGG AGTTTTGTGC AAATCACATG AACAcacgta gaacatttta ggctgctcat gtgactttgg 001360 001361 atttgtccta agggcaatag taagcctttg aactgcttta gcatgatagg attttaaaag atcactggct gctgtgtgaa 001440 001441 caaaaataat gttgtaaaga aaaggatatt agctgtatca gatcagctgg agactactga aataacccaa gctggcttgg 001520 001521 actacatagg agtagtgTAA ACTCattcat tcatgcaaga aatacttact gagtgcctac tcagtaccag acccttttct 001600 001601 aggacatgga gttatagcag tgaacaatat agaaaaaaat ccccgaattc atggagactc cagtgagcag agacaaaaaa 001680 001681 atagcaacta aataagttaa aaggaattga gtaccctata aaagtttatc agggaaatgt tataaggaat gactttcgga 001760 001761 gtaatgggta gtgatcttaa atgtatggtc aatgaaaatc Agaagttgta gagaagtgga taaattcaca gtacgtttta 001840 001841 aagtagacct aataagactt aatgaatttg atgtggcaag tgagaaaaat acatcaagga tgatgacttt tataatttga 001920 001921 cttgagtatc tgggaACAAA CAAGTACAGT GCCATAATAA GGGCAGAAAA TTTTCCATTC ACTCAGCAAC TTATGAACTC 002000 002001 ATTTGCTTAG TCTTTATTGC CTCTTGCATT ATGTAGTTTT CACTTTGCTG GAGTACTTGT ATAGAAGATC ACCAGTGAAG 002080 002081 AAGCCAGAGA TGGTTTATTT GGTCATCCCA ATAATACATC TTATTGTTAA TTAACTCTCA AGGGTTTTTT TTCACAATTT 002160 002161 TAGAAAAGGT TTAAGCAAAT GAATTATTTA ACATGAATTG GCTATGTGAC CCTACTATAA GGTGTTTAAA ACACCAACAG 002240 002241 CTTAAACTTC TTAGATCAAA GGACATCCTC CAGGCCAAAA TGTTTCCACT GGAACGGTTT CTTTGCTTCC TGATTAAAAG 002320 002321 CTTCCCTAAT ATATTTCCAC GTGTTATTAC ATATTTTCGT ATTCACTTTG ATGGAAAGCA AGAATAGCAG CCAAATACAT 002400 002401 ATTTCATGCA TTCTTTTGAT TAAAAATGAT AAAGGTAATA TTAGTGTTTT TTTCTTTCTC ACCTCCAATT TATGAAGTGG 002480 002481 AAATAATTTT CCATGGAATG GCCAACTAAA GAAAAGAAAT ATGATAAATT CAGATCATAT CATTGTTCCA TTTATCCTTG 002560 002561 TACCCTGTCT GTGACAGAAT ACCTGATGTT TGGGATATAA CAAAAATAGA TGcatagaat catagagttt aagaatgtaa 002640 002641 aagacttttg aaatcagcca ttctaatacc ctaattttta agatagacaa aaaatggtct ccggaaggat aaatagtcta 002720 002721 acaaaggtca tgcattgagA ACAAACCTAA TATgagccaa gatggccgaa taggaacagc tccagtctac agctcccagc 002800 002801 gtgagcgacg cagaagacgg gtgatttctg catttccatc tgaggtaccg ggttcatctc actagggaat gccagacagt 002880 002881 gggcgcaggt cagtgggtgc gcgcaccgtg cgcaagccaa agcaggggga ggcattgcct cagtcgggaa gtgcaagggg 002960 002961 tcagggagtt ccccttccga gtcaaagaaa ggggtgacgg acagcacctg gaaaatcggg tcactcccac ccgaatactg 003040 003041 cgcttttccg acaggcttaa aaaacggcgc accacaagat tatatcccac acctggctcg gagggtccta cgcccacgga 003120 003121 atctcgctga ttgctagcac agcagtctga gatcaaactg taaggcggca gcaaggctgg gggaggggcg cccgccattg 003200 003201 cccaggcttt cttaggaaaa caaagcagcc gggaagctcg aactgggtgg agcccaccac agctcaagga ggcctgactg 003280 003281 cctctgtagg ctccacctct gggggcaggg cacagacaaa caaaaagaca gcagtaacct ctgcagactt aaatgtccct 003360 003361 gtctgacagc tttgaagaga gcagtggctc tcccagcacg cagctggaga tctgagaacg ggcagagaac gggcagactg 003440 003441 ccttctcaag tgggtccctg acccctgacc cccgagcagc ctaactggga ggcaaccccc cagcaggggc acactgacac 003520 003521 ctcacacggc ag |
Predicted Small Protein
Name | NONHSAT114771_smProtein_2192:2386 |
Length | 65 |
Molecular weight | 7827.3362 |
Aromaticity | 0.140625 |
Instability index | 59.2734375 |
Isoelectric point | 9.73016357422 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0722222222223 |
Amino acid sequence | MNWLCDPTIRCLKHQQLKLLRSKDILQAKMFPLERFLCFLIKSFPNIFPRVITYFRIHFD GKQE |
Secondary structure | LLLLLLLHHHHHHHHHHHHHLLLHHHHHHLLLHHHHHHHHHHHLLLLLHHHEEEEEEEEL LLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooo oooo |