NONHSAT114791
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114791 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2486 nt |
Genomic location |
chr6+:125582157..125584642 |
Exon number |
1 |
Exons |
125582157..125584642 |
Genome context |
|
Sequence |
000001 aaagaaagaa aagaaaagaa agaaagaaag aaagaaagaa aaggggaagg ggaaggggaa gggaagccac gctcattcac 000080
000081 ttaggtattc gctgtggcta cttcctacaa gaactgattt gagtatctgt gagagcaaca atgtggttcc caagcctaaa 000160 000161 gtatttactg tctggccctt tacaggtaga gttttctgac accAAGCAGA GTACaaaaat tcaatttaat aaataaattt 000240 000241 aaGAGGCAGA GAGAGATTTT AGTGACAATT AGAGCGAAGT GTGTTTTGTA ATGATGGAAC TGCTTTTGAA CCCTGGTTAC 000320 000321 ATTTTTAAAA GGTCAGGCCA GGCAGCACAG ACACAATCCC CAGTGTTGCT GATGTCTGTG AGTGATCACT TTGGTGACAG 000400 000401 TGAGGCATCA ACAATCAGTT TGGCAATAGC AACATTATTT ATTCTATATC TTCTTTTTCC TTCAAAGTGT TTTTTCTACA 000480 000481 TTATGAAAAA CAATGGGAGG GAAGGCCAGT GTGACTATTA ATAAGACTTG CACTAAGCAT TTTGCATCTT GTCAAGCAGA 000560 000561 CCATATTTTT AGTGCATCTA CTTTTTGATA AATACATTAC ATGGCCTGGA CCAAAACCTT AAAAAAAAAA AAAAAGGGCA 000640 000641 AGTTGCATTA CATGTTTTTT TTCCTTTTTG TATTATGAGA GATTAGGAAG CCAGTTTTAA TAAGGGATTT TTAGCAGTTT 000720 000721 TAATAAGGAA TTTTTCAAAA TACTTAGCCT TATTTTTAAA TTGTAAGTTA ATTCCTTCAT GTTTCTATGC TTAGTCAATA 000800 000801 ACAAATACAC AAGAAAAAAG CCTCATAAAC CATCATAACT GCATTGTAAG GAATATTCAT ACTGTAAGGG tgtattaatt 000880 000881 ccatttcacg ctgctgtgaa gaaatacctg agactgggta atttataaag gaaagagatt taattgactc acagttccac 000960 000961 agggctgagg gggcctcagg aaacttacaa tcatggcaga aggggaagta aatatgtcct tcttcacatg gtggcaggaa 001040 001041 ggagaagtgc tgaacaaaag gaggaaagcc ccttgtagaa gcatcagatc ttgtgagaac tcactcacta tcacgagaac 001120 001121 agtatggagg tcaccgcccc catgattcaa ttacctccta ccaggttcct ccttgctagg attatgagga ctatgggaac 001200 001201 taccattcaa gatgagattt gggtgaggac acagccaaac catatcaAAA GGCAGTTGCC TAAGATGATG TGAAATCACC 001280 001281 AGTGATTAAG ACTTGATCCA TCTTCAATTT TCAAAGCAGA AACCAGAAAT CATTTTCCAT TGAGCCACTC TGACTTTTCA 001360 001361 AAAGACATTT GTCAGAAATC CAGTTTGCCC TGCTAACTCC CAAGTAGAAA AATCTAAGTT TAGGTCATGT AAGGATGTTT 001440 001441 ATACATTTGT ACAATTGGAG GAATTAATAA AAAATCTAAT TCCATTTTGA TTAGATCAGT TCTCTGGGTG AGTGGAGATA 001520 001521 GCTGTTCCAA GTCCATGGAT CCGATTATGC TCCTGAAGGG ATTAAAATCT TAGATACAGG AGAGATAAAG AGAGGGTTGC 001600 001601 TAAAAGTGTG CAAAATTAAA GTTTGGAATC CTATCCGAGA ACCCAAGTAT GAATAATATT CTAGCACTCT ACTAAAGGAA 001680 001681 ACAAACTTCT GTGCATTCTT TTGTCTCTAA AGATAGAAAG TATTTCTGAA TTTGAAAGTA ATCCAGCTTT TGGTATTCTT 001760 001761 ATAAAAACAT TACAAAAATG ATAGTAACAA CTAACTGCAT TTTTGTGGAT CTGCTCATTT CAGACGAAAG TAGGCGGTAC 001840 001841 GAACCCTAAT GGAGGCAGTT TTGAGGAGGT CCTCAGCTCC ACGGCCCATG CCAGTGCCCA GAGCTTGGCA GGAGGCTCCC 001920 001921 GGCGGACCAA GGAGGAGGAG CTGCAGTGCT AAGTCCAGCC AGCGTGCAGC TGCATCCAGA AACCGGCCAC TACCCAGCCC 002000 002001 ATCTCTGCCT GTGCTTATCC AGATAAGAAG ACCAAAATCC CGCTGGGAAA AACCCAGGCC TTGACATTGT TATTCAAATG 002080 002081 GCCCCTCCAG AAAGTTTAAT GATTTCCATT TGTATTTGTG TTGATGATGG ACCACTTGAC CATCACATTT CAGTATTCAT 002160 002161 AGATGACTGT CACATTTTAA AATGTTCCCA CTTGAGCAGG TACACAACTG GTCATAATTC CTGTCTGTGT AATTCGATGT 002240 002241 ATATTTTTCC AAACATGTAG CTATTGTTTG CTTTGATTTT TGCTTGGCCT CCTTTATGAT GTGCATGTCC TTGAAGGCTG 002320 002321 AATGAACAGT CCCTTTCAGT TCAGCAGATC AACAGGATGG AGCTCTTCAT GACTGTCTCC AGCAATAGGA TGATTTACTA 002400 002401 TAAATTTCAT CCAACTACTT GTGATCTCTC TCACCTACAT CAATTATGTA TGTTAATTTC AGCAATTAAA AGAATTGATT 002480 002481 TTAATG |
Predicted Small Protein
Name | NONHSAT114791_smProtein_290:520 |
Length | 77 |
Molecular weight | 8533.8248 |
Aromaticity | 0.131578947368 |
Instability index | 50.1343421053 |
Isoelectric point | 5.56341552734 |
Runs | 13 |
Runs residual | 0.0296430732002 |
Runs probability | 0.0458943106002 |
Amino acid sequence | MMELLLNPGYIFKRSGQAAQTQSPVLLMSVSDHFGDSEASTISLAIATLFILYLLFPSKC FFYIMKNNGREGQCDY |
Secondary structure | LLEEEELLLEEEELLHHHHLLLLLEEEEEELLLLLLLHHHHHHHHHHHHHHHHHHLLLLE EEEEELLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT iiiiiiiiiiiiiiii |