NONHSAT114817
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114817 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7657 nt |
Genomic location |
chr6+:126395229..126403972 |
Exon number |
2 |
Exons |
126395229..126395505,126396593..126403972 |
Genome context |
|
Sequence |
000001 gttccagatg agatctgagt gggggcgtag ccaaaccata tcaCTCCAGG AGATTCTTTT GGATATTAAT ATTAGGAATA 000080
000081 TCAGTATTTC TCCTTAACAA ATAATTTAAT AGTGAACAAT ATGAAACACG GAGGACAATG CCGAGGTATT GTTTCCCTCA 000160 000161 GGGATGCCTT CTCCAACTCC TGTATGTGTC TCTGTGTTTA ATGCTCTCAA AGCACTTCTT ATTACCCATA ACCGCTGGAT 000240 000241 AGCATTGGAC TGAAGCTTTC TTAAGCACAG GGCACAGtcc gattgtttaa aagtgtgtag cagcctccct cccccactta 000320 000321 tctctcttcc ccctgctcca gccacgtggt gcttgcctgc ttcccctttg ccttcctcca tgattgtaag tttcctgagg 000400 000401 cctccccagt catgcttcct gtacagcctg tggaaccatg agccaattaa acctcttttc tttataaatt atgcagtctc 000480 000481 aggtagatct ttatagtaat gtgagaatgg actgatacaG GCTGCTGAGA AATGGTAATA TTGtagtgaa ggtaattacc 000560 000561 tctagctgct gcaacagaca aatccccaag tttcccactc aaataaagtt tattttttgc tcatgtgggt ccagttTGTC 000640 000641 CATccatctg gaccatagat tctccaaggt catggttgca aaggagaggg aaggtggaaa aggcacatgg ccttttaact 000720 000721 gccttagccc agaagtgaca tgtgtcactg tggttcagca tatttggcca gatctaatca cagggcccca aggaactgca 000800 000801 ggggaggctg ggaaatgtat tttaTGAGTA TGCATATGGT TAGTGAACAT TAACTGCTTC TGCCACTATA TTTTTGTCAA 000880 000881 CTAGAATTGT ATGCATCCCC TTTTTCTACT TAGTGTGCTA TTAAGGTTAG TAGGTTGTGG GGGGTTGGGG GTGGGAGGTA 000960 000961 GGGAGAAACA GGATACAAGG ATATGCATAG TGATGTCTTC TATCTTTTCT AGTAGCAGAA CCCACATTTC CTTATGAGAA 001040 001041 CTGTCTGTCT TCCAATTACA GCTCTTATAG TCTGGCTTGA CTGTTCCCTG GGCTGGGCAT GTGCCCTATA CCTGACCAAC 001120 001121 CAGAGATCAT TGTAGGACAG AAGGGCGGGG CCATATCTGC CTATGTGACA ATAATTGTGC CCATATAATG CCATCAGTGA 001200 001201 ATGTGTCCTT TGgaaaatga agccaaatca agagaccatt gagccaagag aaaagagata atttggatgg cattgataga 001280 001281 tagaaccttt ggatcaagca ctgccagttc ctatcttgac ttcctcaatt atgccagcca ggtattcctt tactttgaac 001360 001361 taggttgagt tggatttctg caacttgcaa ataaaaaagA TGAGCTAGTG GTTTTCACTC CACAAAACTT CAAAACACCA 001440 001441 TCCTTTCACT CCTTTGTCTC TAAACTCGAA TAACTACCCA TTGCCTAAAA AAGTACTGAT TATAGCCTCT ACCTTTACAT 001520 001521 GGTAGAATTG TTGCTTTTAT GGTACAGTTA CCATATAAAT AAAAAATGTC TAATGTCCTG TGTGTGTCTC TCCTAACCCT 001600 001601 AGTTCAACCA TTGAAGAGTT TTTTTAATTA GCAGTCAGCT AATTACTACC TGAATTAAAA TGGATTTAAT TTTGGCAGCT 001680 001681 AATCATTTCC ACCTGTGAGG AATCAAATAG AAAAAAAGCT TGTAGAATAT TAAGGGAGAG ACTCCCCTCT ATTCTGATCA 001760 001761 TCTCCACAAA AACCAGACTA TTAGTCAATA GAAGGTTTTG CAAATATCAA AAGTCAATCT GAGTAATGTT TTCTCTGGCC 001840 001841 ATGGCAGCAT AAAGACATAG ATCCCACAGC CAGATCCAAA CTCTGTGGAG TGTTTCAGGG GATTTGGCTC AGTTACCCTA 001920 001921 TTTAACCCAA CACTTCACAA GAAAAGTCTG AAAGAAGATA TGCAATAACT TTCTGGTGAC CCAAACTATT GCAACCTCAG 002000 002001 TCCCTAAATC ACATGACATT TGTTTACTTT CTTTCCAATG GGCTGATTAA TTATTTGTCT TTATTTAGTG TTCTAAATCA 002080 002081 GGAGCCAAAA GAAGTTGGAG CAGCTGGGGC CAATTTTTAC ATGTAAAACT AACAGAGCAA TTTGGCTGTC TGATGCTGAA 002160 002161 CTGAAGAGTG ACTTTCCTTT AACTTTGTCA TCACTACAGC ATCCAACCTG CCCTGTTCCA GATGTGCAAC AACTGGGCTT 002240 002241 TGAAAGAGTG TGACTAGAAA ATCAAACAAG GCACGTGGAC ACACAAAGGA GATAAGAGGC TCCAAGAGAT CACGTTCCTT 002320 002321 TCTTGTGTAA TTTCTTTCAT CTAATTCTGT CAACATTTAC TGGAAACCTC TATCTGGAAC ACAGATTacc tcaagtaatc 002400 002401 tgcctgcctc agcctcccaa agaactggga ctgcaggcat gagccaccac gcccagACAA TTTATAATCC TAGTGATCAT 002480 002481 GTTAGAACAA CATCTGTTGT CAACCAATCA TTGAGTATTT GTTGAGGATA TTCTTCGTGC TACATTAAGT GAATGCAGGC 002560 002561 AGCATATCAA GTCTCTACCT TTTTCACAAC CTAGTTTGGT GAGATAATGT TAGTATAGAT TAAGCAATTG TTACTAGTAA 002640 002641 AAATCAGTAT ATTATTAATA CTAAGTTGTG TGGCACAGAC TAGAACTCTC AGAAAAGAGG CTGCAATCAT AAATATGGTG 002720 002721 AGAGTCAGAG ATCCTTCTGG GCTTTAAAGA AATGCTTAAT CATAGACTGT GTACCTATCC CCCTGCTGAA CAAGACACAT 002800 002801 CCTTAGTTTC AAGACAGACT GGGGTTTGGG AATATGGGTA GCTCTGTGCT AATGCATCAC CCCACTGAGG AAACAGGGTT 002880 002881 TGTATTCTAC TTACTGTGGC TTCATTGCAT AAATTTTATG CTCATTGGAG AGAATATTTA CTCACAATCT AGCCCATCCA 002960 002961 TTCTTATAAA AGAGACCTCT GAAAGCTAAG AGTCACTTTC CTGAGGGAAA TGCAAGACTC TGGGAGAGAG AGGGCACTTT 003040 003041 GAGAATGGGA AAATTGCCTG TGAAATCAAA TTTAGGCGAA AAGATAGCCC AGCAGCCATA TGTAAATCAT TCCCTCATGT 003120 003121 AGGAACAATG CTGTGCACTT GGTAATTCAA TAGAAAACAT TAGTCATTTA TCATCCTTAA TTATCAGTCA TCTCTAACTG 003200 003201 CATCTGGTTT GCATTTTTTA TTAGAAAGGT TTTTTTTTTT TTGAGTTGGA CTCAGGCATT TTTTTTCTTC CGTTCCTGAT 003280 003281 TTCATTTTGT TATTCTTTTT AAAATTCCAT CACTAATTCC CATGATGTGA AGAGGTTTCT ATTTCATAAG ACACAATAAA 003360 003361 TCAAGCAACG CCTCTGTTGT AACGTCGTCC TTACTGCGCA TTTGTCATGG GCCCTGGATT GCTGAGTTTA CTCAAGGTTA 003440 003441 GAGAGTCAAG CTGCTTTGAG GACACACTTG GCCAGTGCCG TGAGCATGCA CGTAGCCCCA TCAGAGGAGC CGAAGGTATA 003520 003521 AAACTTCCGT CAACTTGAGC GACCACAGCT GCTTCAGAAA AGTCATGGGG CAAAAAGTGA CCCTGGGAGA TTTTGAAGTT 003600 003601 TGAGTGCTCT TGTCCTGGCA CTCTGGACAG TGTATGATGG CCACGTCACA CTTTTGTAGG AAGAACTCAT GGTAACGAGT 003680 003681 CATGTTTTTC TCTCATAGGA Taatagtaac agcgaatatt tattaagaat tttctgcgtg ttctgcattg tgcaactttt 003760 003761 aaaatacatt gtcacattca attctcatga taaccctttc ggggggaaat agtatttatg tcttttagat gagtaaacta 003840 003841 tggacttaga aagatGTAGT TGCTtgttaa attctcagct ggtgagtccc tggaccataa aggtaaaata aatcataacc 003920 003921 ctaagccttc aggaggtagg cctatgttac agtgtctcca gagagaATCA TTTTAAACAT GAAAATCCCA GGACAAGATA 004000 004001 GCTAAGCTCC TAATTTATTT ATTTATTTTT CTACGGTAGG GGATTTATTT Ttttactgaa gttataagtt tatatgttta 004080 004081 atttaaaaat aatggctgta ttcaacaatt ggctcatgaa acttctgcaa atttaacacc atgctcttgt gagctggagt 004160 004161 gagctggcat gagcacacta ctgCCCGTAT TTaatgaggt tgagatgcca cagcttccaa ggcatgagga ggaggaggga 004240 004241 atctgaagac agacaaatag gaatgttgaa gtggctgtat catgctaact gcacactcat tcccgactac attcctctag 004320 004321 aaagcccaca agatatcttc ttcactaaga cttcgaTTTT TAAAAATTTT ATTTCTTGTT ATTTTGTTTT AGTTTAGTAG 004400 004401 TACCTTAgga ggaaggcaag ggctgaaaaa ctacctattg agtactgtgc tcacgacctg ggtgaaggaa tcatttgtac 004480 004481 tccagacccc aatgacatgc aatctaccca agtaacaaac ctgcacatgt acctccaaac ctaaaataaa agttgaaaat 004560 004561 ggaaagaaaa AAAAaagatt ttgaactatg cgttggtgaa gggatcacca gcatccttgc aaagctccgt ggtaagctaa 004640 004641 ctatgaccat ggaggatgtg ccattgatat gaggattctg atttcaatag ggatggtgga ttcctggagt agtaaaaggc 004720 004721 caagtagcag cactgatcca ccaaacacaa ggtatgcaca ttcactataa agagcagcag acatactagt gatcagaaag 004800 004801 cgttagatct ttggtggtgg ctaactacca gggtgattct aaaaatgaaa taggtgagca gtctgctagt gtattttttt 004880 004881 atctacataa caggaaaaag aaaaccaact ctagttctgt tttgttgttg ttgttgttgt tgttttttta gagacagggt 004960 004961 ctcactttgt tacccaggct ggagtgcagt ggcgtgatca tagctcactg caacctcaaa ctccagggct caagtggtcc 005040 005041 tccccactca gcctcctgaa tagctagaac tacaggcatt cagttatttt gctttatttt ttttttgtct taatgttttt 005120 005121 tggtagagaa agggtctcac tgtgttgccc aggctggttt caaacttctg gcctctcaaa gtgctgggaa tcaacaggca 005200 005201 taaaccacca ctcacagcct gaaaaactct agttcttaca gccaaaaatc tgacttaagt ttccataatg gagagtcagg 005280 005281 gtcactcacc aagtatactg acctaagcta attcacagat ttagagcccc ttgattgaag gggagtccag gtctccttga 005360 005361 ggaaggattc tgcatcattg ctgcgagtaa atactataaa tcttcatcca cgtgttttct caaagaggcc tgtagctatt 005440 005441 tgttagagtg actgtgcact gtggaaaagg aaatgcccag atatttcagt aattactaaa tactctctct taattatgtt 005520 005521 aactcctgtg acctaaacta ctcacggtag cccactagtt aaaacgggag cattcagtgt tcaagataca gatgatgtct 005600 005601 gagcccaagt ttaactcaca gtgggcccag ttggtcagtt gacccccctg tagttattgc cccagttcct gaatgtataa 005680 005681 tgggaataga catacttggc aactatcaga atctccacat tggctctatg acccctaggt ttagagccat tatggtaaga 005760 005761 aggataaagt ggaagcctct ggaacttccc attactacaa agatagtaaa ccagaagtga tattgcatcc ctgggatgaa 005840 005841 ttgcagagac ttgtgccact gccaaagact tgaaatgtac tgggtgatac ctaccacata cccattttac ttacctgttt 005920 005921 ggtctctaca gacattgaat ggatcttgga gaatgactgt gaaccataaa tttaatcggg aggtaattct aatttcaact 006000 006001 gctatccaaa aaatggtatc tttactggag taaataaaca cagcccttgg cacttggtgt gtagctagtg acctgaaaaa 006080 006081 tgccttttct tccataccaa tatgcaaagg ccactggaaa cagtctgctt ttatctggca cagccaagag tagacttcac 006160 006161 gctcttgagt cagagctatg tcaattcttt cttctattat acagtccaca gagaaattga ttagcttgac attgcacaaa 006240 006241 aatgtagggg acactggtct tctacattac gatattgact ggctctaata agcagaaagt agtgcatcag atgccttagt 006320 006321 aagacatatg taaactagag agtgggacat aaaccctaca aaaattcagg ggccttcagt gaggttctgg ggactcagtg 006400 006401 gtctggagta aggggataag tttctggatc taacaccatc taccatgaat aaagaggtaa aatgctttgt aagcagttaa 006480 006481 aacaattttt ttggaggtca catatactac atttgagtat actactccca cctatttact gagttaccca ataggctgcc 006560 006561 agttttgatt gtggaccaga gagagagggg gccctgcagc aattccagct tcagtgactg ctgccctaac acctgggcct 006640 006641 tatgttccag cagatccagt gataatatgt gcatagcaaa tagggatgct gtttggagct tctggcaagt accgaaagga 006720 006721 gaatcataat gcagatctgt agggttttgg aactaatctg tgctctcttc ttcaagtaat aattttcctt ttcaaaacag 006800 006801 tttctggctt gctactggac cacccaaaga ctaaatgcct aaccatggga caccaagata ctatgtgatg tgagcttccc 006880 006881 attatgaatt cagcgttgtc tgatgcacct agccataagg ttgagtgtgg acagtgcaat ctatcttcaa gtggcattct 006960 006961 ttacaatcaa ttaaatgaca gatcttgagc ctagtttaga gacggtcttg catattatgc cgataccacc gaaagtggac 007040 007041 agctccattg ttacagccTT AGGGGTGACT CTGATAATAT GTATGTCCTA TTGTTTCTGT TTCTTTGAAC CCTGGTtaat 007120 007121 agaatatata atattgctgt aatgtaatat actgtattat attatcaata tattgtgtat tttattaaaa tactaatatt 007200 007201 atatattaca atgtaatatc aattgtgcac tataatatac atgtgtaata atgtaataGC AATGGACCAT TCACTTTGTG 007280 007281 TTCTCTTGTT GGAAGACTTG GTTGCCACCT TGCAGAATCT TGTCCCAAAT CATTATCATG TTTACTTTTT ATAGTTTCTT 007360 007361 TTTCACATTG AAAATTAGTC TTAGGGCATA TCCTCTATGC TCTAAAATGA TTTATAATCA AATTGTGATC TACTTTATGT 007440 007441 CAGGTTTCTC AGTGTTCTAG TTTTGAGCCA GGAAACTTTA TCAAATGTAT AATGGGGACT CATAGAGCCT TGAAACTTAA 007520 007521 TCAAATTTAT AAAAGGGACT TTATTTTATT CTATTTTTTT GCCATTTTGG AATTTTATGT CCTATTTAAA TTGTTCTCTA 007600 007601 GCTTTTAATT CAAAGGTCAT TGTTTTCAAC AGATAAAGAA GCAGGTACAA AGATTCA |
Predicted Small Protein
Name | NONHSAT114817_smProtein_4193:4396 |
Length | 68 |
Molecular weight | 8148.4742 |
Aromaticity | 0.149253731343 |
Instability index | 71.7895522388 |
Isoelectric point | 9.29876708984 |
Runs | 10 |
Runs residual | 0.0059388919278 |
Runs probability | 0.042006712595 |
Amino acid sequence | MRLRCHSFQGMRRRRESEDRQIGMLKWLYHANCTLIPDYIPLESPQDIFFTKTSIFKNFI SCYFVLV |
Secondary structure | LEEEEELLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLEEEEHHHHHLEE EEEEEEL |
PRMN | - |
PiMo | - |