NONHSAT114882
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114882 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2673 nt |
Genomic location |
chr6-:129800758..129873731 |
Exon number |
22 |
Exons |
129800758..129801000,129802406..129802555,129802647..129802783,129802928..129803046,129803532..129803639,129804752..129804809,129806379..129806463,129807537..129807717,129815213..129815437,129820605..129820735,129823750..129823936,129843622..129843752,129844314..129844381,129845112..129845209,129847768..129847930,129849810..129849883,129854061..129854114,129860321..129860520,129861592..129861687,129867540..129867637,129867768..129867773,129873687..129873731 |
Genome context |
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Sequence |
000001 GGTTACCACT GGAGGGGTTT GAGCAGAGCC ATGGCATATA CTGATCTACG TTGGAAGCAG AAAAACTGCC AGGAAAATGT 000080
000081 CACAGCCACC CCTTACTGAA CAGCAGAAAC ACCAGCAAAA CACCAACTGC AACATGGTGT ATTTTGAAGG TGAGATTAAA 000160 000161 TTTACCTACA CCTAGAGAAA TAATTGGAGC ACATGTCTAT TTGGGCCAAG AGGATAAAGG CCAGTAGAGG AATCAGATCA 000240 000241 AAGAACTTCC TCAGGGAAGT GTGCAGAGAA CTGGAGTGGA CCTTCCCCTA GGAAGCTGCC CAAAACGAGA GTGCTGGAAA 000320 000321 GCTGGCCGCA GTGAGGCACT TCAGATCCCA AGGGTATGCT GGGGAAGCTG CCACAGGTGG GAGCACTTGC TGCTGGACCC 000400 000401 TAGGCACTGT TGAAACAACT GCACCATCTG CAGGAGCCCA GCAAGGTGCC TTCAGCCATG ATTATAAGTT TCCTGAGGCC 000480 000481 TCCCCAGCCA TAAGAAACTC CAAAGCCAGG CATCCCATCT GGAGAGAGAG AAGACTGAAG CAGAAACACG ATGGGAAGGA 000560 000561 AGCAAAGATG GAGAGACGAG TTTTTGGATT CAACTGAAGC CCTTGCTATC TGCTAGAGTC AGAGTCATCA CAATTGGGGG 000640 000641 GTCTTCATTA AGCTACACTT TTTAATGGAA CATCCTAGTG AGGTTTGAGA GTACAGCTTG ATGGTCTATA TTACATTACT 000720 000721 AAGCCGATTT TATTGGAAAG AACTTGTTTG CATCCCTGCT AGACAAAAAC CTACAAGTTA ACCTTTGCCC GTATGGAGTT 000800 000801 GTAAAACAGA CCAGTTGATA GAAAGAGAAG CCTGCTTCCC GAAGCCCTCA GCAGAAGCCG AGCAGATGTT GGCACCATGC 000880 000881 TTCTTGTACA GCCTGCAGAA CTTGAAGAAA CACTCCATAT TAGTTTTCTG GAGCCATCGT TATGAAGCAA CACAGACTGG 000960 000961 GTGGCATAAA CAATGGAGAT TTATTTTTTC ACAATTCCGG AGGCTAGAAG TATGAGATCA AGGTGTTGGA AAGTGTCTCA 001040 001041 GGATGATACA TACCGGTTTT TAACTTTGGT GTCATCAAAT GCAATTGCAA TGTGACTGTT TCTTGAAAGC CCGAACTGCT 001120 001121 TGCTCCCTAT CAAAAGAGCT GGTTCTGATT CTGCAGCACA AGGACCCTGT AAAATACCCA GGAGAGAAAA ACAGGAGATT 001200 001201 ATGGACTGTT CTTTAAAAAG CATTTTAAAG GGGGAACAAG TGAGATGGAA TAGAAACTGC CCTGTGCTTT GCTCAGAAAT 001280 001281 AAAATGATCT TGTCACTAAG GATGATGTTT TCAACTCTGC TTGCCACTGA AATCTAAGCT AAGAAAAAAG GTGCAAGGAG 001360 001361 CACATTGCTC AACCAATTCC ATCGTGGACA CTAAGGAAGA GAATGAGATA TTCAAGAGTT TTCAAGATCT GCACTCAAGA 001440 001441 CAACATTGCC CACCCATTAC TGGTATGGAA TATAACCACA ACACATGAGC TGTAAAGAGT GTAGTGACTG TGACCATCTT 001520 001521 TGTTGTATTG GTGATAAGAA TGTAAATTGG CATAGCCTGT GGAAGAAACA ATTCAGATTC GGCTCTGGTC TGATGACAAT 001600 001601 TTTCCTCATT GTTCGTGCCC CTGTGGAGAG ATGCACTTCC AGACGGCCCC TGTTGAGGAG TATTACATAA TAGGCCTGCA 001680 001681 ACAGCAAGTG GTTATTGAAG ATTAAACAGA AGTCTCATTT ATGGCTTAGC TTTAGAGATT CCCTGGCAGA ACCACAGGAA 001760 001761 TCTGTTTTAT TTTAAGCACT ATCCTGAAAG CTGGTGATTC ACATTCATTT CTTTTATCTT GAAGAGGAGA AATTTGGAGC 001840 001841 CAGAATTTCA TCTTTGATAT AAATTTTAGA ATAAGCTGTC ATGATTCACA GAAAAATAAG ACAAAATAAT TCCTATGAAC 001920 001921 CCTTTCATTG AGAAAAACTA GATTAAATGG AAAATTACGT TTTAAAAAAT GTGATTGAAG ATATTAAAGA ATACCAAGGC 002000 002001 AATAAGAGAG AGGATGGGAT GAGTCAGGCC CAAAAGACTA TTACTTCAGC TTGTGCAACT GGGAAAATGA TCTTAGAGGA 002080 002081 ATTCACATTT AAATTTAAGG GACCGAAGCT GACTGTCTAC AGATTTGGAA CATCCTAGAG AAGACAATTG TCCTGGGGAG 002160 002161 ATGATGTGAG TGAAATAGGA GGCCAGCATG GAAATATGGA ATGTTCAGTC CTTGCTAGCC AAGATGAGAG CAGAAATAAA 002240 002241 TGATACGAAA CTAAAAATAC AAAAGTGGTG CTGGTGTCCC TCCACTTCCC AAAAGAATGA TGCCGGACTC ATTCTTGGTG 002320 002321 CTGAATGACA GGTTGATTTC TGTTCCTACA TCAATTGGCA CAGGGGAGAG CTCCACAAAA CCAGGCTTAG GAAAGCTAAC 002400 002401 TGTGTAAACA TTCTAGTGGG TGTCTATGGC CAATTCCAAA TTGGAGCCTG TAGCTATGAA CAATGAAGAT CCTGAAAGTT 002480 002481 CTGTTCCAGT CTTTAAACCT CATCATTCAA GTGGTGGATT TACTTTTTTC TTTACCCACA TTTTCCCTTC ATTTCCCTAA 002560 002561 TTCTATTGGA GTGGTTTAAG ATAATTTTGA TTAGAAGCAG CAGACAAAAT GAATAATTGT ATTATGATAG GATAATTAAA 002640 002641 AATGTATGAG AATGACAAAA AAAAAAAAAA AAC |
Predicted Small Protein
Name | NONHSAT114882_smProtein_1946:2137 |
Length | 64 |
Molecular weight | 7215.2219 |
Aromaticity | 0.111111111111 |
Instability index | 44.8015873016 |
Isoelectric point | 8.78729248047 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0358995358996 |
Amino acid sequence | MENYVLKNVIEDIKEYQGNKREDGMSQAQKTITSACATGKMILEEFTFKFKGPKLTVYRF GTS |
Secondary structure | LLLLHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHLLLEEHHHHHEEELLLLEEEEEE LLL |
PRMN | - |
PiMo | - |