NONHSAT115030
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115030 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1717 nt |
Genomic location |
chr6+:134758854..134825158 |
Exon number |
3 |
Exons |
134758854..134759019,134785879..134786196,134823926..134825158 |
Genome context |
|
Sequence |
000001 TTTCATACTG CTGTTGATGA TGTGAATTTT GGAAATATTC TCCCCTATTG GGTCTTTCTC CATGACAGAT GATGTCCTTT 000080
000081 GGCTTCGGTT TTTTGCCTAA GAACTGTAAG TGGTGCTTGC TAGCCCTACT AAGAATCCTG CCATTGTTGC AAATTTCAGA 000160 000161 AAAAAGGCTG GAGTGCAGTG GTGCACACGC CTCACACTGT GACACAGCGG GAGAGCCCAG AGCGACAGCT GTTGGAATGA 000240 000241 CTGCACTCTT CCTGCTCAAG TCTGACCTTT CCAAGGTAGG ATTTGATTAC AACTAGCAAT ATGGAATTAC AAGCAGGGAG 000320 000321 AGGTGCCGAG ACCACAAGAC ATCAGGAGAC TAAAATAGCA AGGTGGTGAG GCAATCTGCC TTTTATTCCC CTTTCAAGCT 000400 000401 ATGAGAAGTA GGCAAATGAT GCGGCTGAAC AATGCCTCCT TGACTTCAGG ATATAAAAAC TACTTTCATG AGCTTCAAGT 000480 000481 CAGGCCTTTG TCCTATGTCT GGAGACTTCT TGGAAGCTGG AGCACACAAA TAGCTACAGC AAACTTGAGG AATGGGCATG 000560 000561 AATAGACTGG CTTCGGGGAA CCTGCCAGCT TGGCCGTGTG GCCAAGGTAA TAGGCAAGCC AAGGCAGAGC TAGAGCTCAG 000640 000641 AGCTGGAGGG GAAATTAAAG CAGCAAATGT AGAAACATTA AGCCTGAAGA GGCGACGACG TTGAATTCTA AAATGCAGGC 000720 000721 CAAAGCTCAG ACTGCAAGCT GTCTGGCTGC TCCGGGTGTG CCCAGAAGTC AAAGTCCAGC AGGGGCAAAG GTGGAGGTGT 000800 000801 GGTCCTGCAC GTGGGGTGTT GGGGGGATGT GGAAGAGGAG GTGCTTTAAG ATCCAGAGAT TCCAGCTGCC CTGGTGCACC 000880 000881 CTTGGAAGAA TAAAAGGCTA GGAACTGGAC AAGTCAGGCT CGAGTCCAAG CTGCCTGAGG AATCGGGGAA AGAATGGAGC 000960 000961 TCAGAGTGGG AGGTCAGGGC AGTATTTAAA AATCCAGGAT AGCAGCAAAG CTGGCGGTGG CCCCTGACTC TGGTAAGGGC 001040 001041 AGCCTGCAGC ACCATGCCAA GGGGGGCCTG ACTGATCATG CCCTGCATTT GCAAACAAGG ATTAGTAGGG TATGAGTAGG 001120 001121 ATTCTGCTGG TGCCTGGGAA GGCAGTGCCA TCTACAACTT TACAAAGTTT TAACAAAGGC CTGAAGGACA CAACCTTCCC 001200 001201 CAAAGTCCTG ACGTCGCTGT TTGCTGGCAA CAAATAGAGT CAAAAGAAGA GAGGCACAGA ATGTGCCAGG GGTGTGCTGC 001280 001281 GTACAGCCCC GATGACCACA AGGCCTTCTT GGGTCAAGTT CTGCCATCTC TGGTTAAGAT GGGCTCACCC TCTAGGACCC 001360 001361 TGATTGAGTC CTCGGACCAC CAAGAGTGCC CCACCAAGAG CCTCCCTCTT CTGGTGACTC GTGCCTGCTT CCCGTGGAGA 001440 001441 GCTCCAGAAG GGAGGAAACT GTGAGGAGGT GGAGAACGTG GCAGGGATCC TAACTTTCTT ACTGAAGGAA GTTCTTCACA 001520 001521 AGTACCCATC TGCCTTCAGG GAAGAAAACA TAACTCATTT TGGTCTTTCA AATTCAGTTC TCAAAACCAA ATCCTGTTGT 001600 001601 CAGCAATCTG TGTCCCAACG CCTTCTTCAG CAACAGCATT TTCCCTGTGG AATTAGTTTC CAATGTTCTT TCTTAAATAA 001680 001681 ACCACTGAAG ATTAAAAGGA ATCCAGATAC CCACCAC |
Predicted Small Protein
Name | NONHSAT115030_smProtein_68:295 |
Length | 76 |
Molecular weight | 8234.663 |
Aromaticity | 0.0933333333333 |
Instability index | 40.508 |
Isoelectric point | 8.44830322266 |
Runs | 11 |
Runs residual | 0.0022695035461 |
Runs probability | 0.0387258916671 |
Amino acid sequence | MMSFGFGFLPKNCKWCLLALLRILPLLQISEKRLECSGAHASHCDTAGEPRATAVGMTAL FLLKSDLSKVGFDYN |
Secondary structure | LEEELLLLLLLHHHHHHHHHHHHHHHHLLLHHHHHLLLLLLLLLLLLLLLHHHHHHHHHH HHHHHLHHHLLLLLL |
PRMN | - |
PiMo | - |