NONHSAT115032
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115032 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1687 nt |
Genomic location |
chr6+:134759528..134825158 |
Exon number |
5 |
Exons |
134759528..134759659,134773173..134773267,134785879..134785987,134792047..134792164,134823926..134825158 |
Genome context |
|
Sequence |
000001 AAAAAACTGA GAATACTATA GCTGATTAAC TTACTGTTTA GTTCTCTTAA AAATATCTAC CTTCTTATCA TTATAATTCT 000080
000081 GGAATGAAAA TCAGGAGGAC TGCCTAGTAC TGCCAATTCT GACAGTGATC TGTGATTATC CAGGGACTAC AGATGGGGTC 000160 000161 AGCAGCATGC CCAGTCACCT GCATTGCCTA ATGAATGGCT GACTGCCTCA GCATCCCCTG GGCAGAGGCT GGAGTGCAGT 000240 000241 GGTGCACACG CCTCACACTG TGACACAGCG GGAGAGCCCA GAGCGACAGC TGTTGGAATG ACTGCACTCT TCCTGCTCAA 000320 000321 GTCTGACCTT TCCAAGGGTC TCACTCTGTC ACCCAGGTTG GAGTAAAGTG GTATGATCAT GGCTCACTGC AGCCTCGAAC 000400 000401 TCCTGGGCTC AAGCAATCCT CCTGCCTCAG CCTCCTGAGT AGCTGGGACT ACAGCCTTTG TCCTATGTCT GGAGACTTCT 000480 000481 TGGAAGCTGG AGCACACAAA TAGCTACAGC AAACTTGAGG AATGGGCATG AATAGACTGG CTTCGGGGAA CCTGCCAGCT 000560 000561 TGGCCGTGTG GCCAAGGTAA TAGGCAAGCC AAGGCAGAGC TAGAGCTCAG AGCTGGAGGG GAAATTAAAG CAGCAAATGT 000640 000641 AGAAACATTA AGCCTGAAGA GGCGACGACG TTGAATTCTA AAATGCAGGC CAAAGCTCAG ACTGCAAGCT GTCTGGCTGC 000720 000721 TCCGGGTGTG CCCAGAAGTC AAAGTCCAGC AGGGGCAAAG GTGGAGGTGT GGTCCTGCAC GTGGGGTGTT GGGGGGATGT 000800 000801 GGAAGAGGAG GTGCTTTAAG ATCCAGAGAT TCCAGCTGCC CTGGTGCACC CTTGGAAGAA TAAAAGGCTA GGAACTGGAC 000880 000881 AAGTCAGGCT CGAGTCCAAG CTGCCTGAGG AATCGGGGAA AGAATGGAGC TCAGAGTGGG AGGTCAGGGC AGTATTTAAA 000960 000961 AATCCAGGAT AGCAGCAAAG CTGGCGGTGG CCCCTGACTC TGGTAAGGGC AGCCTGCAGC ACCATGCCAA GGGGGGCCTG 001040 001041 ACTGATCATG CCCTGCATTT GCAAACAAGG ATTAGTAGGG TATGAGTAGG ATTCTGCTGG TGCCTGGGAA GGCAGTGCCA 001120 001121 TCTACAACTT TACAAAGTTT TAACAAAGGC CTGAAGGACA CAACCTTCCC CAAAGTCCTG ACGTCGCTGT TTGCTGGCAA 001200 001201 CAAATAGAGT CAAAAGAAGA GAGGCACAGA ATGTGCCAGG GGTGTGCTGC GTACAGCCCC GATGACCACA AGGCCTTCTT 001280 001281 GGGTCAAGTT CTGCCATCTC TGGTTAAGAT GGGCTCACCC TCTAGGACCC TGATTGAGTC CTCGGACCAC CAAGAGTGCC 001360 001361 CCACCAAGAG CCTCCCTCTT CTGGTGACTC GTGCCTGCTT CCCGTGGAGA GCTCCAGAAG GGAGGAAACT GTGAGGAGGT 001440 001441 GGAGAACGTG GCAGGGATCC TAACTTTCTT ACTGAAGGAA GTTCTTCACA AGTACCCATC TGCCTTCAGG GAAGAAAACA 001520 001521 TAACTCATTT TGGTCTTTCA AATTCAGTTC TCAAAACCAA ATCCTGTTGT CAGCAATCTG TGTCCCAACG CCTTCTTCAG 001600 001601 CAACAGCATT TTCCCTGTGG AATTAGTTTC CAATGTTCTT TCTTAAATAA ACCACTGAAG ATTAAAAGGA ATCCAGATAC 001680 001681 CCACCAC |
Predicted Small Protein
Name | NONHSAT115032_smProtein_521:673 |
Length | 51 |
Molecular weight | 5477.2779 |
Aromaticity | 0.02 |
Instability index | 62.608 |
Isoelectric point | 11.2936401367 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0216098451393 |
Amino acid sequence | MGMNRLASGNLPAWPCGQGNRQAKAELELRAGGEIKAANVETLSLKRRRR |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLEEEEELEEELLLLEELL |
PRMN | - |
PiMo | - |