NONHSAT115180
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115180 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5514 nt |
Genomic location |
chr6+:138141787..138147395 |
Exon number |
2 |
Exons |
138141787..138145737,138145833..138147395 |
Genome context |
|
Sequence |
000001 TATTTAATCA CTGCTGTTGA AGAGCACTGT GAGTTTGTCA TGTAAGAAAT CCCATGGGAA ATGATAACAG ACCTGACCAC 000080
000081 AGAAAAATGG TAAACTTCTG AACATTAAGA AGGGCACAGA CTAAAATACA AACATCTACA TAGAAAGATC TACAGTAAAA 000160 000161 AATAAGAGAT AATCATCTAA TATCTTCTGA AACATAGAGC TTATAAAAAT TGATTCGAAA AACATGAAGA TTTCAGAATA 000240 000241 GAAATGGACA AAGGACACAA GACAACTCAC AATACAGCAA ATATAAATAA ATAAAAAACA GATGGAAAAT GTTCATCTTG 000320 000321 TTACTTAACA AAGGCAAAAT TGAAACAGTA GTAGAGTAAT TTTTCTTACT ATCAAGTTAG CAAAAATAAT TTCTTTGCCT 000400 000401 AATCATGTTG ATAAGAGCAC AATGAAACAG GAAATCTCAT AAACTGCTTG CAGGAGTATA AAACTTTCTG GAAAGCAATG 000480 000481 TGCTGTTTCC CAAGAGGACT CTAAGGGTTT GTATCCTTTG ACCTAGTAAT TCTGCTTCCA AGAACTTATC ATCAGAAAGT 000560 000561 AATTTAAAAA TTCCAAAATA TGGACATCAT GCATAAAAGA TGTTCATTTC ATCATTGCTT ATTAAAAAAA AAACGGAACA 000640 000641 CCCTAAATGC CTACTATTCA TTTCAATATT TTTTGAGCAC CTAATATGTG TCAAACAATG AGCTAGAACA GACACCAAAC 000720 000721 ACAAACCAGT TATGATTCTT ATCCTTCCAA TACTGGGAGG AACTGCAGGT TGGGAGGAGA TATACATTGA ATTAAGTAAT 000800 000801 TATTACACTT GTTACAGGAA TGCATAGCAG AGGCACCTAA CCAGAGGGGG GTGACATTTA AACTAACTCC TGAAAACTAT 000880 000881 GTGAAAGTAA GCAGAAGGGG ATGGCAGATG AAATATTCTG ATTAATACTT CAAGAAGCAG AAACAATGGG AATAAAAGAA 000960 000961 TCTTGCCGTT TCAAGGAAGT ATCATAATGT GTTCCAGAAA AAGGAAACAA CATATTGCAA GTCCAGGAGG AAAAAAATTT 001040 001041 GACCTAAATT AAGAGTGTCC TCATATTTCA AAGTGGCGAT GAAGAGAGTC CAAGCATCTG TTGGGAAGAT GAGACCTAGC 001120 001121 AGGAAACACA GTGGAGTTGC TTTCCTCCTC TTCTTCTGAT TAATTTCACA GGTTTTTCAC ATTTTTAGTT TAAATGTCAC 001200 001201 CTACGCTGGT TAAGTCCCCT CTGCTATGAA CTCTTGTAGC AAATGTCATA ATTACTTGAT TAAATGCTTA TCTCCTCCAA 001280 001281 GACTGTAAGT TCTGCAAGGG TAAGAATTAT ATCTGCCTTG CAGATGGGTG TGGTGGCTCA CACCTGTAAT CCCAGCACTT 001360 001361 TGGGAGGCCG AGGATCACCC TAGGCCAGGA GTTCGAGACC AGCCTGGCCA ATGTGGTGAA ATCCCATCTC TACCAAAAGT 001440 001441 ACAAAAATTT AGTTGGACAT GGTGGTGCAC ATCTGTGGTC CCAGCTACTT GGGAGGCTGA TGTGAGAGGA TTTCTTGAGC 001520 001521 CTGGCAGGCG GAGGTTGTAG TAGTGAGCCA AGATTGCACC ACTGCACTCC AGCCTGGGTG ACAGAGCGAG ACTCTCTCTC 001600 001601 AAAAAAAAAA AAAAAAGAAT TTTATTTGTC TTGTGTTTGG TTTCTGTTCT AGATCAGTGT TTGACACATA TTAGGTGCTC 001680 001681 ATAATGGTGT TAGGGAGTGA CCCACCACCA GGAAGCACAT GGGAGGATGG CTATGTGGCA GTGTTGAGGG ACACTGAATC 001760 001761 CGAAGTGCTG GGTCTTGAAT TCATCAGTAA AAACATGAAG ACCTGGCCCA TCAGGAGGAC CCACAAGGGA ATGAGGAAAG 001840 001841 GTCATCGTGT TGGACACACA TCTATGGTCT GGGCCTGTCA GGCTCCAAGG GTTGTGGTGT GTGTGCACTT GTATCTCCAA 001920 001921 GAGAACGGGA GTGACATCCC CAAACACAAA TGAGGTTAAC TTTTCTAAGG AACATTGGTT AGTGGCCAGG CGTGGTGGTT 002000 002001 CACACCTATA ATCCCAGCAC TCTGGGAGGC CGTGGAGGGT GGATCACTTG AGGTCAGGAG TTTGAGACCA GCCTGATCAA 002080 002081 CATGGTGAAA CCCCATCTCT ACTAAAAATA CAAAAATTAG CCAGGCATGG TGACACATGC CTGTAATCCC AGCTACTTGC 002160 002161 GAGGCTGAGG CAGAAGAATC GCTTCAACCC AGGAGGCGGA GGTTGCAGTG AGCCGAGGTC ACACCACTGC ACTCCAGCCT 002240 002241 GGGAGACAGA GTGAGACTCT GTCTCAAAAC AAAACAAAAC AAAACAAAAA CCAAAAACAT TGGTTAGTGT AGCCAAGAAA 002320 002321 GATTTTTGAC TTAAAAAATA AATCTGTTAT CCATGCAGTG TGTTGATGAA AAAAAGAAGA TAGTATGTGT TACAAATAAG 002400 002401 ATAAATATTA CATAACCATT TGTAAGATTA TTTATGAAGA GTTTGTAATG ATGTGGGAAA GAGGTTATGA TATAAAGTTA 002480 002481 AGCAAAAGAA AAAGTAAATG CCAATTATAA AAATAGTATA TTGTTAGCTT TGCTTAAACA TATATACGCA CACACTATCC 002560 002561 GCAAAAAGCA GGAATATACT TCACTCTGTA AGTGGTGGTT ATCTCTGAGT GACATTTTAC AGGATGTTCC CCTGCTTTTT 002640 002641 TTTTACTGTA ATGTACATTC CAAATTATTA GATTAGTATA TTTACTTTTA CAAATGGTGA TTATACATTT TAATAGTTTC 002720 002721 AGAATGTTAA GATCTTAAGA GACTAAGCTT AGTTCTATAG CTAGCACATA GTAGCATTGC ATAAATATTA TTCAATCAAT 002800 002801 TAATGAAGTC ATCACTTCAT CGCAAGAGTG TACACAAAGT ATTAGAACTA TTAAAATGTT TGTGTGTGCA CCAGCCCCAT 002880 002881 CAATTCTGAA CAACGCCCTA TGCCCTATCT GTCATAATTA TATATTCTTA TTTTTGGGGT CCTCACTCCT TAAAGCAACA 002960 002961 TTGTTGTTTC CTTCATTGCT TCTCCCCAAG CACAGAAGCA AAAAAAAAAA AAGAGATCAT TTATTGTTTT AAAACCTTCA 003040 003041 TTTATTTTGG GATGTCACTA CCAATTTTTC AGGCCTTAGA CATGTAAGCA TGCATTTCTA CTTTTTTAGA TTTTGAATCA 003120 003121 TGTAGAAATC TAGCCAAATT AATTGAGAAT ACTCTATTGA ATAAATCAAC AACTTTACTT CCAGGGTCCT GTTAACCTAA 003200 003201 GCTAAAGATA AAAAAGCAGC AACAAAGTGC CACTGTTATC TGGTTAAAAC TGACAACTGT AAGATGTATG GATGATTTTC 003280 003281 TACAAGTTTA GAAACAGGAA ACAGTGCTTG CTGCACTTGC CACAGGGCAT ATAAACTGAG AAAGTTATGT AGAAATTCAA 003360 003361 GATCAGAGGA TGAGCGCAAG GATGATCTTT GAGAACAAAA CAGTGAACAG AGCCCTTTGT GGTGGCAAGC AGTGACGTGA 003440 003441 GGTTGTGTTT ATGTGAATAC AAACCCTCTC CTCCCAAGTC TGGTGACTAC AGTGTTTTCT TCCCACCTCG TTGTTAATTG 003520 003521 TGGAAATCTG GCTGTCACTA TTAACATATC AAACAGAGGT CTTGATATTA TCTGCAGCTG ATCATTTGTT TAGGTTTTAC 003600 003601 CCGCAGGAAA AGTCTGGTGG CAGCCAGTCC CAGGACAGCC ACGCATGACG CACAGAAGAG TCCTTATAGT TCCCCTGGAG 003680 003681 GGGGTGATGA TGCAGGCAAA TGCCACGCCT GATCCCTTTG GGTCTCCGTG GCAACAAGGC TGCTTGTCAG ACTAGATGAT 003760 003761 AATGAGCCAT GATCTGGAAG AGGCTTATTC CATAACAGGA GGGAGGTTTC AAAGGTAACA CGTCAACAGC AATGCCTCGG 003840 003841 CAACAGCTGT TTGTTATTGT AGTCGTCAAG GACAGAAAAA GGACAAGGCT GCCAGAAGAT GTTGCATATG GAACAGAAGA 003920 003921 TTCTTGCCCT GGAAGAAGGA ATAGAGGAGA TGATACCTCC CTTCTGAACA TCTCAGCACC CCATCAAGAG AACTTCAGGT 004000 004001 CTCTGCCATT TAGACGTGTC ATTTGTAAGT AAAATAAATC AGGGAAGTAA TAGGAGGAAA GCTAAGAATG AAAGGAATTC 004080 004081 ATCACCACTG CAAATTTGTC CCTGAAGCAA GGTGAGTCCC TGCCCATCTG GCTACACCAG CTCTTTTTTT TTTTTTTTTT 004160 004161 TTTTTTTTTT TTTGGCCCTT ACTAGACCCC ACTTGGGATT TTGTTGGCAT ATTTGCTTGG ATGTCTATCT CCTCTGTAGT 004240 004241 TCCTGAGGTC AAGATTACAG TCTCTTTTTT TTTTTTTTTA GTTTTTGTAT CTATGGTGCC TGGCAAAGAA AAGAAGCTCC 004320 004321 ATCAATATTT ACCAGTTGCT GGTGGCAATG GTAATGGTAG TTGTGTAGAA GGTGGGAAGG ATAGAAGTAT AGCTAAGTGA 004400 004401 CGGGACATTC TATTTCTACA CCTTGTTTAG CTATGGAGGT CTCTGGAACT AGCCAGGCTA GCCAAGACTG GGACTTCTTG 004480 004481 TGTCTTCTCC AAGAGAGGCA GAATGAGCCT AATGGTTTAG AACGTGGGCT CTGGAGCCAG ACAAGCCAGA TTAGAATCCT 004560 004561 GACTCTACTC CAAGCAGTGT GAGCTTTGGC AAGTTACATA CCCCATCTGT GCCTCTGTGA GGATGAAACG AGTTCCTTAG 004640 004641 AATGATGCCT GGTACCCCAG AGGAGCTATT CAGGTTCAAT TGACTCTGTT TCTAGTATTA CTGCTCAACT TAGGAAGAAA 004720 004721 AGAAGTGCAG AAGAGGAGAG GCTTTTGCTT CAAATTTTGA GTTTCACATT TAACCTTGCA GTTTTATCCC TGGGGAGCTT 004800 004801 CTGCCTGGAT GGAGGATGAA TCTGGTATCT AAGCTCCTCC TTAGGGCTGT CATTTAGACC AGTGCCAATC CCTAGGAGTG 004880 004881 CTTCTGATTT CCTGCTTATC TCCTACAAAT GTACAGTTAA GTCAATTCAA AAGAAAAGAT AAATGGTCCA AACAAATCCA 004960 004961 TTGTAGCATA CTGTAATTCA CTGTCCATGG GGCAATTCAT TTGCCCTTGA ATTATTATTA TCTTCCTTAC CTGATGTGCT 005040 005041 TGACACTTAT GATCTTGAAC CATGCTGGGC ACCATGGCAA ATTTTGATAT TTGATATCAA ATATCAAAAT ATTTGATATT 005120 005121 TTTTCCTTGA TGCTTTTGAA GACACCTCCT CCATAACCAC GATCAGCGAC CAACACTCAA AAGGCTGAGG GGAACTGAAG 005200 005201 CCAAGTTAGG GAAACAATGT AAATGCCTGG CTGGTTAACA CGTGGATATC CAAAGAGTTG TTGGGTCTTC TCACCTCTAC 005280 005281 CCTCATCTGC CGTGAGCACA CAGTGCTCCA CGGATATATT CAAACTTGAA TCAGGCCAGG CACGGTGGCT CATGCCTGTA 005360 005361 ATCCCAGCAC TTTGGGAGCC CAAGGCGGGC GGATCACAAG GACAGGAGAT TGAGACCATC CTGGCTAACA TGGTGAAACC 005440 005441 CGGTCTCTAC TAAAAATACA AAAAATTAGC CCCGCATGGT GGCAGGTGCC TGTAGTCCCA GCTACTCGGG AGGC |
Predicted Small Protein
Name | NONHSAT115180_smProtein_5222:5452 |
Length | 77 |
Molecular weight | 8340.6079 |
Aromaticity | 0.105263157895 |
Instability index | 76.8671052632 |
Isoelectric point | 7.77142333984 |
Runs | 11 |
Runs residual | 0.00332728372656 |
Runs probability | 0.0415281591752 |
Amino acid sequence | MPGWLTRGYPKSCWVFSPLPSSAVSTQCSTDIFKLESGQARWLMPVIPALWEPKAGGSQG QEIETILANMVKPGLY |
Secondary structure | LLLEELLLLLLLEEEELLLLLLLLLLLLLLLEEEELLLLEEEELLLLLLLLLLLLLLLLH HHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |