NONHSAT115318
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115318 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2293 nt |
Genomic location |
chr6-:142889285..143000719 |
Exon number |
3 |
Exons |
142889285..142891213,142907637..142907823,143000543..143000719 |
Genome context |
|
Sequence |
000001 CAGGATCACC TTCTGGGACA CCAGGAGAGG AGAGTGGGTA GAGAATAGTG GACCTGCGCT CCTAGCATGT CTGTCTCCTC 000080
000081 TCACTTGCTT GATCTGGCAT GTGGAGCATA ATAAGATACT GGGCTGTAGC AGAAAAATCT TTGGACTCCT AGGATGTCTC 000160 000161 CCCTGGCCTT TCTGCCAACA ACAGTTAAAA TTATATTCAA TGATATTAAC AGTTCTTTCT TTTATTTCCC AAATACATTC 000240 000241 TGATATAAAT TGTGATAAAG AAAATGGGTT TACATGTAAT TAAAGTTTTT ATATCAATAT TTTTAAATAA CTATAAAGCT 000320 000321 CTAATTTGTG GGTTACATGT ACATCATTAG AACAGACAGG GTGCCTAGCT TTATTTGTCA TCTATCTCTT CTATGAGACT 000400 000401 CTAAACTTGC AAACTGCCAA TCCTGCCTGA GAGTAGGTGT TTCTGGGGAG GGTGAACTGA GAAAGGCATG GATGTGGTTT 000480 000481 GGGAAAAGAG GGATGTGAAT TTCACAACAG CAAAATGACT GTCTAAACCC ACTTCAGAGA GAAGGAAATG GCTTAGTGAC 000560 000561 AAACATCTCA GGTGTGGGAA GTGAACTGAA ATGGCTTTGA TTCCGTAGTG TGAAAAGAAC AAAAGAGTTC TTTGCTTATC 000640 000641 ATTCAGCTGC CTCAGACTCC TCCACCCTTT CCCTCTTCCT GCCTCCCTCT CATGTTCTGT AAGCTCAGTC CTTTGGAAAG 000720 000721 TAAAATCTTG CTGCTCCAGC ATTTAATGTT ATGCCATTGC TCAGCAATGA TCAGGATCTG AAAAATATCT CATCAGCAAC 000800 000801 TTAAACATTA ATCATAGGTT TTTGAACTTT AAATAGTTGC TTGAACTCTA GCAAATCTTG AGTTAGATAA ATAAAAATGC 000880 000881 ACACAAGAGG TTTCAGTTGT CATTCAAATG CTCACAGTTT ATTTGGTCTC TGAGGCTCTG CAGCCTGTAA GAAAGAAGGA 000960 000961 GTTCTTTGCA TTTTGGTACT TCTGAGTAAA AGCAGTTGTG AAAAATATGT AAGGTGATAG CTCATTATGC ATCTTCTGTG 001040 001041 AATTTCAGGG AAATGTAAGG TTGGAGGTTT GATCAGTCTT TAGCTCTTTC CCTCTGCCAC TCTAATTCAT ACCCATTGAT 001120 001121 GAGTCAGAAG CAGACTCTCA GAAAAGAGAA CTAAAGCCAT AGCTCAGAAA AAGTAAGTTT TATTTAGTGT TACATGTTAC 001200 001201 TTTTATTAAA GAAACCATGG AAGATTTTCT GAACCAAAGG AAGACTATAA TGTGGTTGGC TAGAAATGAA GATAAAAGGT 001280 001281 TTCTCCAGAA GGCAGGAGGC AAACTCACAG CATTTCCTCC CTGTTGCTAA GTTATGTAAG GAGCAAGATC ATAATCAGAA 001360 001361 TGTTTCTTTG GTGAGCATGG AGCTTAATTT AAAAAGGAAT TCAGATGATC TCATAAAGAG TCCTTCAACT GAAAGAGGAA 001440 001441 TAGCCTTGCC TGTGGATAAC GCATTTATAG TTCCACTGAC CAAGAGTCCT CTCACTGGGC TGTACTGAAT AAATACCCTT 001520 001521 CAACAAAGTC CTGTGTGCTA TGCAGGTTAT CTGCTGGTGA TAAATTTTAT TTTCTTTATG AACTCAAAAT TTCATAGAAT 001600 001601 CATGAGCAAA GACATATTCA ACAATTTGAT TTGATTTATA CAAAGAAAGT AAAAACCTCC CAAAAAACAA AGCACAAAAA 001680 001681 CCCATCTTTT CATAAACTTC TTCAAGAGCA CCTCTACTGT ATTTAGTGAT AGATACATGA ATCTAAATCA GGTATCTAAG 001760 001761 GATAAAATAA TGATGTGGGA AGAGATTGAA ATGATGCTGG GAACAGAGAA ATTTACAGGG AGGAATAATT TGGTTGGAAT 001840 001841 CTACAAGAAT GGAAAGAGGT GCTCTCTAGA CTCCCCTATA CACATAGTGC AATGCTGACC TGCATATCCA CTGATGTGAT 001920 001921 ATTTCTCATG ATACCAGTGC CTTATGATCA GGAAGGGATA TTTCCGGCAT GGTCGTTTCA ATAGTAGAGA TGGATTTGAG 002000 002001 TTAATGTATC ATCCATACCC TCTTGCTTGG TCCCCCTTGT GGCTTTTGAA TAGGATTTCT GAACAGCTAG GACACAGTCT 002080 002081 GTGGTCATGG AGCAGTATTA GGCTAACAAG TGTTCAAAGT CTTGTTTTTG GCCTCCAAGG TGAGGAGATG TATCCGGCTG 002160 002161 AGAAAAAGGC CATATAAATA AAATAGGTTT ATTTTATTTA TGGGGCAGAG GCTCTCAAAC TTCAATGTGC ATCACTGCCC 002240 002241 CGAAGAGGGT GTTTAAAATG CACATGTCTA GATGACTGCT AGAGATTTAG AAA |
Predicted Small Protein
Name | NONHSAT115318_smProtein_1265:1507 |
Length | 81 |
Molecular weight | 8979.2433 |
Aromaticity | 0.05 |
Instability index | 53.165 |
Isoelectric point | 9.30035400391 |
Runs | 11 |
Runs residual | 0.00131578947368 |
Runs probability | 0.0472852531676 |
Amino acid sequence | MKIKGFSRRQEANSQHFLPVAKLCKEQDHNQNVSLVSMELNLKRNSDDLIKSPSTERGIA LPVDNAFIVPLTKSPLTGLY |
Secondary structure | LLLLLLLLHHHHLLLLLLHHHHHHHHLLLLLLEEEEEEEELLLLLLLLLLLLLLLLLLEE ELLLLLEEEELLLLLLLLLL |
PRMN | - |
PiMo | - |