NONHSAT115334

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT115334

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1968 nt

Genomic location

chr6-:143342826..143359901

Exon number

5

Exons

143342826..143343093,143345615..143346340,143358126..143358719,143359426..143359449,143359545..143359901

Genome context

Sequence
000001 TGTTATGGTA AGAAGGAAGA AGGAAGGAAG GAAAGAGCAA AAGGAAGGAA AGAAGGAAAG AGTGAAAGGG AAGGGAGGAA 000080
000081 AGAAACAAAA AAAATTATCA ATGCAAGTGA ATATGTCTGT GTACATATCC ATGAATACAT ACATATATTT CAAAATTCTG 000160
000161 ACCATGGAGA GGACCTAGGT GCAATGACAC CCCAGTAGCA ATTAATAACA AGTATGTAGG TTCCAATTTC CATAACAAAC 000240
000241 AACAAGGACT CCTTGTAAAA GTGGATGATT CAAGGATGGA GGTAGAGAAA TTTCAAGATA AGCCTGGAAC GTTGGATAAT 000320
000321 AATGAACTGT GGTTTGAATG CTGGTATTTA TCGCTGTGGT TTCAACTTGC TTAACTTGCT CAATGGAATG CTATCTCTAG 000400
000401 AGTACTGAAA GAAACTAAAG GCCAACGTGT GAAAAACAAT CTTCAGAAAT GAACGTTAAA TGATGACATT TTCAAACAAA 000480
000481 CAAGCAACAA AAAGAAGCAA AAAGTAAACA AAAAACAAAA ATTCACATAA TTTATTGCTA GGAGTTTTAC ACTGAAATGC 000560
000561 TGAAGGGATT TCTACTAGCA AAAGTAAAAA TGATCTCATT TGAAAAGATG GAAATTCAAG GAGGGAATGA AGAATACTGG 000640
000641 ATGGGTAAAT GTGTTGGTAA CTGTAAATGA ATACTGACTA CACAAAATTA TGTTGAATAA CTGAAAGATG AAAACACAAT 000720
000721 CACTTGAAGG AGAAATGTAT GGTCAAACTG CATGCAGGAA AAACTTCTAT AAAAGAGTTA CTTCATGCTC TGGGTTGGCA 000800
000801 GATACAATGA GCAGGAGTGC ATCAGAAGTA ATCAAGAAGG TGATTAGTTG GTGTACTTCA GCAGGAGCAA CCAGATGAAT 000880
000881 TGGCTTCTCT ATATCCCCGT ATTAGCCACA AGCTAGGCAG CAGCCTGCAG GTGGGAGCAA TGCCTATGCA TGTATGGATC 000960
000961 AGTGTGCTAC ATACAGGCAT TTTTGTTATA GCAGCCTGAC TAGACTAAGA CATTGTAGTA TGTAAGCAAA ATGGGCTCAT 001040
001041 TTTTATATAT GACAGAGACA AAAAAACATA AAACATATTA CTGGAAAGAT ACTAAAGCAC TCAGATAAAA TGAAATGGAA 001120
001121 ATGCTATTTT CTCCATGAGA AAACAAAAAA GAAGAGGAAG ATAATAAGGT GCCTGATTTA AAAAAAAAAA AAAAACTTTT 001200
001201 ACTTTTGAAT AGTTTCAGAT TTACAAAAAA AAGTCGTGAT GATAGTACAG AAGGTGGCTA TATAACCTGT ACCCAGTTTC 001280
001281 TGTTATTGTT AACATACCAC ATCTCTATGA TTCATTTTTA ACAACTAGTG AATGGTTATT GACATATTTT AATTAACTAA 001360
001361 GACCAAACGT TATTCAAATA TTTTTACTTT TTACCTAATA ACCTCTTTCT GCCCCAGGAT CCAATTCAGG GTGTGTGACA 001440
001441 TTACATTTAG TCATCATGTC TTCTGATTTC AGTCTGTATA ATTCCCAGTT CCTCACAGCT GGGACTCCTG ACATCCCATA 001520
001521 TACAAGAGCA ACTCCACCCC TGTGTCAGGC CATATTTAAA CTGTGCTAAT CCCCCAGGCA GAAGCCTCAG TATCAAGTCC 001600
001601 CATTCTTAAT ATCAAGTCCC ATTAGGTTTG ACCCCATACT AAAAGCTACC AAGTTAGCCA GTCAGTCCCA AATTACAGGC 001680
001681 CTTCCATGTA CTCTGTTCCA CAGGTCACGT TGACAGCATG AACCTTCGAT GTGATGTGAG GAAAATGGCA TTCTACCTCT 001760
001761 GTGTTCTTCC TCCCCAAAAT TTGTAACCAC CATCTAATCA TGAGGAAAAC ATCATACAAG TCCAAATTGA GGAAGATTCT 001840
001841 ACAAAATGCC TGATTAATAT TCATCGAAAC TGTCAAGGTC ATCAAAAGCA AGGAAAGTCT GAGAAACTGC CACAGCCTAA 001920
001921 AGACAATCCA GGGAAACGTG ATGACTCAGT GGTATTCGGG GTGGGTTT
[back to top]

Predicted Small Protein

Name NONHSAT115334_smProtein_707:877
Length 57
Molecular weight 6156.0167
Aromaticity 0.0714285714286
Instability index 58.4430357143
Isoelectric point 9.50701904297
Runs 11
Runs residual 0.0431303669009
Runs probability 0.0496459025871
Amino acid sequence MKTQSLEGEMYGQTACRKNFYKRVTSCSGLADTMSRSASEVIKKVISWCTSAGATR
Secondary structure LLLLLLLEEEELEELLLLLEEEEEELLLHHHHHHLLLHHHHHHHHHHHHHLLLLLL
PRMN -
PiMo -