NONHSAT115476
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115476 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1428 nt |
Genomic location |
chr6+:148799829..148801899 |
Exon number |
3 |
Exons |
148799829..148800154,148800489..148801210,148801520..148801899 |
Genome context |
|
Sequence |
000001 ctGGGCTTAG TGCAGATGAG CAGGTCGGCG CTGGGGCAGC TGGTGGAGTG GGTGGCAGGT GAAAGTGACA GCCTCCTGTC 000080
000081 CATGCTGCTC ATCTCCTGCG CCTTCATTCT CAGCCTGGTC TGCTTTGCCA CAATAGTAAC CACCTGGCCT AGCTGCCAGC 000160 000161 TGGTGCAAAA TGCTCATCAT ATGTTTTCTC TCCCATTACA TTCCTTGGGC ATGCCATACA TTTGGGAAAA GTTAAATTGA 000240 000241 ATTTCTAGAA AGTGCATATG AGAAGTATGG GCATATGAGA AGTATGGACC TGTATGTAGT TTTTCTGTGG TGAGCAAGAC 000320 000321 ATTTACGCAC CACTTTTTAA TAGTAAAACC AAAGATGCAG AAGATGTCTA CAGTCATCTC AGGACACCTG CGTTTGGGAA 000400 000401 GGGAGTTGAA TGTGACATGC CTAATCCAGC GTTCTTGGGG CAAGAGAAAA TGTTAAAAAG TAGCCTTAAA GTAGCCCACT 000480 000481 TTAGACAGCA AGTTTCTATA ACTGAAAAAG AAAGGAATAC TTTCAAGCTG GGGAGAAAGC AGAGAAAAAA ATTGTGTGAA 000560 000561 GCTCTTTCTG AGCTCATAAT TTGATAGCTA GCCATGGTTT ACATGGAAAG GAAATCAGAA GTCAACTCAG TAAGAGGTGG 000640 000641 CACAGCTGTG CGCAGATGTG AGTGGCGGCT TCAAGCCTTT GGCCTGGCTG CGGCCACGTT GGCTGCCTCT GCGTGGTTGC 000720 000721 AGAAGCAGCT ACAAAGCTCA TTGAGAGCAC AACTATTGTC TGTAAGGCAA CCCAGAAACA CAGAAACCAG AAGAAAAAAT 000800 000801 CCAAGGCATT CTCCAAACTT TACTGGATAC TACAGACAAG GGTGAGCACC TGTTGGCAGA TGAGGAAGTC ACAGGGCTGC 000880 000881 TTATTAGACT GTTCTCAGGG CAGCATACAT CCTCAACTAC TGGTGCCTAA ATGAGCTGCT TTGTAGCCAG AGATGAAACA 000960 000961 CTTCATGAAA AATGTTATTT GAAGCAGAAA ACTGTCCGTG GAGAGGATCT ACCTTCTTTA ACTTATGACC TGCTCAAGAT 001040 001041 TGAAACTCAC TTAGACTTCC TGTATTGACT ATATTGAGAA TGGCTAAACT GCCTCAGAGG GTGTGATAGG ACGTACCATT 001120 001121 CCTGCAGGCC ACCAAATGGG TTTATCTCTC ACTGTCAATC AAGGATTTCA AGACACTTGG GTGGAGCTTG TGGATCCTGA 001200 001201 TCAGTGATTA CAGGACATCT CAACAGGAGA GAAGATGGTC TTGGAGGCGG GCGTCATCAT ATTGGGAAAA ATTTTGCCCA 001280 001281 TGTTCAGATC AAGACAGTTT GGTCCACTCT GTTTCATTTG TATGAATTTG ATTTCATTGA TGGATATTTT CCCACTGTAA 001360 001361 ATTATAAAAC CGTGGTTCAT CACACCCCTA AAAACCCAGT TATCACATAC AAATGAAGAT CAAAATGA |
Predicted Small Protein
Name | NONHSAT115476_smProtein_593:844 |
Length | 84 |
Molecular weight | 9537.7722 |
Aromaticity | 0.0843373493976 |
Instability index | 64.8602409639 |
Isoelectric point | 11.5542602539 |
Runs | 10 |
Runs residual | 0.0195448460509 |
Runs probability | 0.0290319731496 |
Amino acid sequence | MVYMERKSEVNSVRGGTAVRRCEWRLQAFGLAAATLAASAWLQKQLQSSLRAQLLSVRQP RNTETRRKNPRHSPNFTGYYRQG |
Secondary structure | LEEEEELLEELLLLLLLEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLLLLLLLLEEELL |
PRMN | - |
PiMo | - |