NONHSAT115529
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115529 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1881 nt |
Genomic location |
chr6-:150319155..150326280 |
Exon number |
4 |
Exons |
150319155..150320020,150321202..150321330,150321989..150322804,150326209..150326280 |
Genome context |
|
Sequence |
000001 CTTGCCCCGC GTTTCTTCTG TGCTTCCCGC TTCTGCTACT GCTGTCCGGC TGGTCCGGGT CAGGGCGGGC CGACACACAC 000080
000081 TGTCTTTGCT ATGACTTCAT CATCACTCCT AAGTTCAGAC CTGAACCACG ATGGTGTGAA GTTCAAGGCC TGGTGGATGA 000160 000161 AAGGCCTTTT CTTCACTATG ACTGTGTTAA CCACAAGGCC AAAGCCTTTG CTTCTCTGCG GAAGAAAGTA AATGTCACAA 000240 000241 AAACCTGGGA AGAACAAACT GAAACACTAA GAGATTTCTC CCTTCTCTCC CACACAAGCA CACTAAGACA AACTGAAACA 000320 000321 CTAAGAGATG TGGGGGATTT CCTCAAAGGG CAACTGCCTG ACATTGAAAT GGAGAATGTA ATACCCATCG GTAAGTTTAA 000400 000401 AATAGTCCAG GACAGCAGAG AGCAGACACA GTAGTGTCTT AGAGGCATTT ATTGGTTTCC TGTAAAAAAT AAATCAGAAG 000480 000481 TTTGTGTCAC CCAAGAGGTT GAGGAGCATG GGCCGGATGC AGCAGAGAGA GCAAGTCCAG GAGCCAGGAA AGGAAGCAGG 000560 000561 GTGGGGCTCA GGATTTGTCA AGATCAGAGC TGATCTCTTT GCAATAGGGC AGAGCCCCTC ATTCTGCAGG CCAGGATGTC 000640 000641 TTGTGAGCAT GAAGCCCACG GACACGGCAG AGGATCTTGG CAGTTCCTCT TCAATGGACA GACTTTCCTC CTCTTTGACT 000720 000721 CAAACAACAG AAAGTAGACA GCACTTCATC CTGGAGCCAA GAAGATGACA GAGAAGTGGG AGAAGAACAA GGAGGTGACC 000800 000801 GTGTTCTTCC ATAACATTTC AATGGGGGAT TGTAAGACAT GGCTTGAAGA CTTTTTGATA TACTGGGAAC AAATGCTGGA 000880 000881 TCCAACAAAA CCACCCTCTC TGACCCCAGG CACAACCCAA CCCAAAGCCA TGGCCAGCAC CCTCAGTCCC TGGAGCCTCC 000960 000961 TCATCATCCT CTGCTTTATC CTCCCTGGCA TCTGAGGAGA GTTCTTTAGA GTGACAGGTG GAAGGTGATA TCAAGAAGCC 001040 001041 TCTGTTAGCC TGGTCTGGGT CCTGCTCTCC CTTCAGGGAG GCCGCCTGTC TACTCACCAC TGTGCCTTTC TGGAAAGCAG 001120 001121 GAGTTCAAGC CTTAGCAAGC CCAGAGGCCC CCAGCAGATG ATGAGGACAT TGTCGGCTCA ACATCTCAGG CCACTCATTA 001200 001201 CCTTCGCTCA TGATCCCAGC AGCCATTTTT CTTAACACCT TCTGCCACTT TCTCTCGGTG CTAATGGATG GAACTCCTGC 001280 001281 ACAAGTTTTA ACTGAACAAG AAATCCCAGC AAAAAAGCAT TTTCTTTCTA CTTTTTTGAT TGTGGAAAAG CAGACACTTC 001360 001361 TCTGAAGCAT GACCTTATTC TTCCAAACAG TATCGCTTAT TCTTCCAGTG CATGCTGGAC TTCAGACCTC AGGGATCCTT 001440 001441 TCGATGCACT GACCAAGAAT TGTATTAATT TTTTTTATTT TTATGGTTTT TTACATTTTC TCATCCTGTC AACCATACTG 001520 001521 GAGTGAAGTG GCATAGTCTT CACTCACTGT AATCTCCAGC TCCTGGGCTC AAGTGATCCT CTAGACTCAG CCTCTAGAAA 001600 001601 TAGCTGGGAC TACAAGCGCA TGCCACCATG CCCGGCACAT TGTTTTATTT TTAGGTAGAG ATTGGGTCTT CCTATGTTGC 001680 001681 TCAGGCTAGT CTTCAACTCC TGGCCTCAAG CAATCCTCCC ACCTTGGCCT CCCAATGCTC TGGGATTACA GGCATGAACC 001760 001761 ACAGTGCCTG TTGTAGAAAT TTTAAATTAT TTAATACGGA AAAGTATTAC ATTCATGATT ATTTTATTTA GTAATTTATT 001840 001841 AGCCTAGATT TATAGTTAAA TAAAGATGTC TATTTTCAAA G |
Predicted Small Protein
Name | NONHSAT115529_smProtein_764:994 |
Length | 77 |
Molecular weight | 8760.2218 |
Aromaticity | 0.118421052632 |
Instability index | 43.2907894737 |
Isoelectric point | 5.12298583984 |
Runs | 9 |
Runs residual | 0.0229885057471 |
Runs probability | 0.0598932265599 |
Amino acid sequence | MTEKWEKNKEVTVFFHNISMGDCKTWLEDFLIYWEQMLDPTKPPSLTPGTTQPKAMASTL SPWSLLIILCFILPGI |
Secondary structure | LLLLLLLLLEEEEEEEELLLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLHHHHHHLL LLHHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHHH |
PiMo | i??????????????????????????????????????????????????????????? ???????????????? |