NONHSAT115652
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115652 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1957 nt |
Genomic location |
chr6+:155161312..155163251 |
Exon number |
1 |
Exons |
155161312..155163251 |
Genome context |
|
Sequence |
000001 CACGTAGTAA GCATTTAGTG CTAGTGTTTA CTCACCACTT CCATTCATAT GAAGAGTTTA GAAACTAATC TTTGTCCTTA 000080
000081 GCGGCAGTGG ATAATTTACA GTACTTTTAC CTTATTAGAA TATATAACCT GATTTTGTTG TTTTTTTTTT AAGTCTTCTA 000160 000161 TTCAAGTCAC TAAACTTTAT ATTCATATAA GGTTTAATCC ACAGCATGTC ATGATGCTGG CCTTTGATAA CTTTTTTCAA 000240 000241 GAGTCCTTGG ACAGATGACT GTGACCATTG TGGCCATATT CTTACCTAAC CCACACATTG GAGAACGTGT TTATCAAGTT 000320 000321 TATGAGTTAT ATTTCCACTA ATCTTCGTAA AAGTAATTAT CTTGCTTATT ATTACATGAA ATAAATGTTG CACGTGAACA 000400 000401 AGCATTTTTT AATAATGAGT CTGTTTATTA CTGAACTAAG TTTATACGTT AGCAAGGGTT TCAGTAAAAT AAGATTTGTG 000480 000481 TTAAATAATC TTCAGAAGTG GTATTCTGTG GTGATAAAAA TTGCTTTAGG GTTGCATTTA TATCGCTGCG GTCATACCAA 000560 000561 GGGTCAGGAT ATAGGTTTTT AGTTGGCAAA ACCATCAAGG ACTCCATTTA GAAGGGTATT TTTAATAAAA TTTATTGAGT 000640 000641 ATTTTAATTA CAGCCCTCTG CTTTCATGTA TTTTTGCTAG CAAAATAGTC TTTGACCACA GGTTTAATGC ACTCTCACTA 000720 000721 CAAGGAGAGA AGGGTTTTGA GGGTGGAGGG ACTTGAACCT GTAGTGTGGC AGGCATTCTA CAAAATATAT TTTCAGAAAT 000800 000801 ACCCTATGGG GTAGGCTTTG TTATCTTTTC TTTACAAGTG AAGAGGCGAA CTCAAAAGAT GCCTATGGTT GGTTACACAG 000880 000881 CTTTTGATTT GCATAGGTAT TCGAACCCAG GTTTTGCTGA CTTCAATGCT TTACCTTAAA AGATGCTTTT TTAGAATGGT 000960 000961 AGATGTTAAT AGATGGTCTG TGTAATTAGT TTCCTGGGCC TCCTGCAACA ACATAGAAAA AAATGGGTAA CGTAACATTT 001040 001041 ATTCTCTCAC AATTCCAGAG GCCAGAAGTC CAAAATCAAG GTGTCAGCAG GGCGATGCTC TCTGAAGGCT CTAGAGGAGA 001120 001121 ATCCTTCCTT ACCTCTTCCA AACTTGTGGC AGTTCTCAGC AGTCCTTGGT GTTCTTGGCT TGTAGATGCA TCACTCCAAT 001200 001201 ATCTGCCTCC ATCACCCCCC AGCTGTCTTT CCTCATATGT TTTTGCATCA TCTTACCTCT GCGTCTGTGT TCAAGTTTTC 001280 001281 TTCTGCTTAT GAGGACATCG GTTATATTTG TTTAGGAGCC TACCCTATTC CAGTGTGATC TCATCTTAGT TACATCTACC 001360 001361 ATGACCTTAT TTCCAAATAA GGTTACATTT TCAGACATGG TAGTTAAGAC TTTAACGTAT ATTTTTGGGG TTGAGAGGAC 001440 001441 ACAATTCAGT TGGTAACAGC TATGACAAAA TTGGGTAAAT TGATGAACAT CTTAAAAAAA ACACAGTGGA AGAGGCAGGC 001520 001521 ACTGTAGAGT GACAAAATAC ATCTTTATAG AAATTCCATG TTAAAATTAT TTTGTGTTAT AATAATCAAA TTTAAATACC 001600 001601 TAATACATAT ATTACCATTA AACAGGATAG TCAGCACTAC CTAGTTTTTT AGCTGAATTT GTAATGTCCA TATGTTTATG 001680 001681 TTTCTTTAGT AATACTTGAA CTAAAGGAAT TTGCAAAGAA AACCCAATAA TATTAGTATT ACATCAAAAA GTTACTGTGT 001760 001761 ATTTTTCTTC CATCAAGAAA TAATGCTGAC TTTTAAAGGT GGAGGAGTTT TTAGACTTCA GTAAACATAG GTACCCTGAA 001840 001841 AATGTGCACT GTTGTATCTT TTCACTTTTG TATGTCAGTG CTTTGAAAAA ATGGACAATG TTATCATTTT GTTTTGTCTG 001920 001921 CTTATTAAAA TTTTCTCCCC AAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT115652_smProtein_1022:1291 |
Length | 90 |
Molecular weight | 9764.1743 |
Aromaticity | 0.123595505618 |
Instability index | 59.0078651685 |
Isoelectric point | 6.00128173828 |
Runs | 15 |
Runs residual | 0.0253359770875 |
Runs probability | 0.0503739033151 |
Amino acid sequence | MGNVTFILSQFQRPEVQNQGVSRAMLSEGSRGESFLTSSKLVAVLSSPWCSWLVDASLQY LPPSPPSCLSSYVFASSYLCVCVQVFFCL |
Secondary structure | LLLEEEEEELLLLLHHHLLLLEEEEELLLLLLLEEEELLEEEEEELLLLHHHHHHHHHHH LLLLLLLLLLEEEEEEEEEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLHHHHHHHHHHHHHHHHHHHLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo ooooooooTTTTTTTTTTTTTTTTTTTii |