NONHSAT115756

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT115756

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

2226 nt

Genomic location

chr6-:159030738..159042668

Exon number

2

Exons

159030738..159032720,159042426..159042668

Genome context

Sequence
000001 ATGGTGCTGG ATTGGCACAA GGTCAGGTAC CACCAGAGCA GAATGTGGGA AGGTGTCCCA GCAAGCGCAG CTGCCTCCGG 000080
000081 GAGTCCGGTG ATGTGGCCCC CTCAGCTGGC CAGCTCAGAG CTCTGTGTTG GGTTCAGGAC GGGCTGGTAG CCCCAAGCGC 000160
000161 CTGAAAACCC AGGAAGAGGA TGGTGTGGCT TGCTTCGCCG AGGTTATCCT GGGGCTCATC CTGCCGCAGA AGTAACTCCT 000240
000241 CCTGTGTGGG CGGGGCCGCC ACCAAAGGCT GCCTGATTCA GAGCACTCAG GGAGTCCTTT CGTCAGGGGG AACCCCTCCA 000320
000321 CATCCTACCA ATCCCTTTCT AGAAGAAATA GCTTCTCTAG AAAAGGAAGC CTGCAGCTTT AAGGCTGATT CCAAAGATAG 000400
000401 TTCTCGTAAC TCCATGAACT CTTAATTTGC AACTGAAGCT GAGAGTCAGA ATGATACGAC TGAGGAACCC AACAAGGTCC 000480
000481 AGAAAAGGAA GACGGATAGA CTTCGACATC AGGGCTCCAC AATGATCTAC CTGGAGGCTA ACCAGGGCAT CCAGGGAAAT 000560
000561 CAATGCCGAA AAGGAAGGGA GAGGCTGTCA CTAGTTCAAA ACCAAGCATA GCAGAGTGTC CCAGTTGTGG AGAAGGACCA 000640
000641 GCTAGGAGTG AAGGACCAGC CAAGACTGAG AAGGAACAGC CAGGAGTGTC ACAGTCACCC CTGCTGAGAA GGATAGTCAA 000720
000721 TCCCAGAGGT CAGTGGAGAA GGACAAGACA GTGCCAGAGA GGAGCAGCTT CTGTGACAGG AGAGTAGTCA CAGACCCTCA 000800
000801 GGAGAAACCC ACTGAGGAGC CCCTTGGGGA CCAAAGGACA GTCACTGACA AATGCTCTCC ACCCCTCGAG TTTCTGGATG 000880
000881 ACTCTCTCAT TTAGAAATCC GAAAGCATAA AGATAGGGAG GTGGTGATGG AGCACCCCTC TTCAGGAAGC AACTGGTCTG 000960
000961 ATCTGGAGAT CTCCACGGTC AGATTCTCTC AGGAGGAACC CGTCCCACTG AAACCCTCAG CCATTCCAGA GCCTTCTTCC 001040
001041 TTCACTACTA TGTCATGTAC CTGCCTCATT TTTACAGTAG TCCTTGGTGT GAGTATGTCA GCTAGTGCAC CAGCAGCCCC 001120
001121 AAGCCTGCCG GCTACCTGTC TGTGAGCAGC AGCAGCAATG ACGCAGCACA GGCTGGGAGG AGCAGCCCGA GTGCCTGAGT 001200
001201 GATTCTTCCC CCAACTCTGC AGTGAGCGCC CATAACGTCT CCAGAGATGT GGAGGCCTCA GAGGAAGGCA GCTCCCAGAA 001280
001281 TTCTCACTCA TTTCACTTCT CCAGAAGCTC GGGAGGAAAA GAGGTGAAGC AAAGAAGAAC ATTCCAAGAG GAGATGCCTC 001360
001361 TGTGTCCTTG TGGAGGACAC ACATCCAGCT CCCTGCCAAA GAGCCACTGG GAGCCAAGCC TAGAGCAGGG CTTCACTGAT 001440
001441 ACCCACTGTC ATTTGGATAT GCTGTATTCC AAGTTGTCTT TCAAAGGGAC CTTGACTAAG TTCAGAAGAA TTTACAGCAG 001520
001521 CTCCTTCTCT AAGGAATTTC AGGGTTGCAT CTCTGACCTC TGCCACCCTC ACCCTGACAA ATTGCCTACG GGGGGAGCTG 001600
001601 TTGAAAGAGA ATCTGGTCTG GGGGGCCTTT GGCTGTCACC CTCATTTTCC ATGTTACTAC AATAAGAGTC AGGAAAGAAA 001680
001681 TCTTTTACAA GCCTTAAGGC ACCCCACGAC TGTGGCATTT GGAGAAACAG GCTTCAATTA CTCCTACAAG TGCACCATGC 001760
001761 CTGTCCCAGA ACATCACAAG GTATTTAAGA GACAGCTTGA GCTGGCTGCG TCTCTAGAGA AGCTTTGGTG ATCCTCTGCC 001840
001841 AGCAAGCTGA CGAGGATCTG CTGGACACCA TGAGAAAATG TGTGTTCTCT GACTACAAGA TACACAAGCA TTGCTTCACT 001920
001921 GCAGCTACCT GGCCATGGAA CCCCTGCTGA AGTACTTTCC CAACGTCGGT GGGCCTCATG GCAGTCCTGA CGTACTCCTC 002000
002001 CACCTGAGAA GCCCGGGAAG TGCTGAGGCA GATCCCACTG GAGAGAATCA TCATGGAAAC GGATGCTCCC TACTTCCTCC 002080
002081 CTAGCCGGGT TCCCAAAAGC CTTTGCCAGT ATGCCCACCT GGGCCTGGCC TTGCATACAG TCCTGGAGAC TGCCAGAGTC 002160
002161 AAAGATCTAG TCTCCCACAC CCTGGCCACT TTGCGTGAGA ACACCAGTTG CCTCTACAGT CTTTAA
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Predicted Small Protein

Name NONHSAT115756_smProtein_179:424
Length 82
Molecular weight 8492.4032
Aromaticity 0.0493827160494
Instability index 69.2345679012
Isoelectric point 8.47467041016
Runs 9
Runs residual 0.03106859619
Runs probability 0.0328760132683
Amino acid sequence MVWLASPRLSWGSSCRRSNSSCVGGAATKGCLIQSTQGVLSSGGTPPHPTNPFLEEIASL
EKEACSFKADSKDSSRNSMNS
Secondary structure LEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLEELLLLLLLLLLLHHHHHHHHH
HHHHHLLLLLLLLLLLLLLLL
PRMN -
PiMo -