NONHSAT117117
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT117117 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
2030 nt |
Genomic location |
chr6_dbb_hap3-:3223170..3225455 |
Exon number |
3 |
Exons |
3223170..3223384,3223469..3224507,3224680..3225455 |
Genome context |
|
Sequence |
000001 CTCCTTCGTG AAGCTCACAC CTCCCCCGCC CCGGGAGGGG TTTGCCCGCC ACTGTCGCTG AATGATTGCA TCATCGAAAG 000080
000081 CAGAAAACCA CTTTTGCATC CTTCGGCCTC TGGCGTGCCT GCCATGACGT CATAGCTCTG CGGAGGTGGA AGTTGGGGAG 000160 000161 CTTTGAGGTA ACTGGATTCT TGATCTGAGC GCAGACGTCC TTCCTAACCT CACTGCATTT GGAGGACCTG GAGGGAGGGT 000240 000241 GGGTGAAGGG CAAGGAAAGA GGCAGGATGA GAGCTTGGCC GCGGTGGCGT CTGAGGGGCC TGAATGTTTC AAGGCCAGAG 000320 000321 CCTGGCGATC AGGTGGCTCG CTTAGTCCTA AACCAGTCAT CCTTCTCCAG GCCTCCTCTG TAGAATGGAA ACTCTGTACC 000400 000401 CCTGCTTGTC TTAGGACCTC ATGGATCCCA GGGGGACCAA GAGAGGAGCT GAGAAGACAG AGGTAGCTGA GCCTCGGAAC 000480 000481 AAACTACCTC GTCCAGCACC TTCTCTGCCC ACAGACCCTG CCCTCTACTC TGGGCCCTTT CCTTTCTACC GGCGCCCTTC 000560 000561 GGAACTGGGC TGCTTCTCCC TGGATGCTCA ACGCCAGTAC CATGGAGATG CCCGAGCCCT GCGCTACTAT AGCCCACCCC 000640 000641 CCACTAACGG TCCAGGCCCC AACTTTGACC TCAGAGACGG ATACCCGGAT CGATACCAGC CCCGGGACGA GGAGGTCCAG 000720 000721 GAAAGGCTGG ACCACCTGCT GTGCTGGCTC CTGGAACACC GAGGCCGGTT GGAGGGGGGT CCAGGCTGGC TGGCAGAGGC 000800 000801 CATAGTGACG TGGCGGGGGC ACCTGACAAA ACTGCTGACG ACACCGTATG AGCGGCAGGA GGGCTGGCAG CTGGCAGCCT 000880 000881 CCCGGTTCCA GGGAACACTA TACCTGAGTG AAGTGGAGAC ACCGAACGCT CGGGCCCAGA GGCTTGCTCG GCCACCGCTC 000960 000961 CTCCGGGAGC TTATGTACAT GGGATACAAA TTTGAGCAGT ACATGTGTGC AGGTGAGTTG CCCCTGCTTC ATAGCCCCCT 001040 001041 TCCCCTTCCC AGAGGTTGAG AGCCCCCCAC GCCTGCTGCT GCTTCTCTCC TTGTGCAGAC AAACCTGGAA GCTCCCCAGA 001120 001121 CCCCTCTGGG GAGGTTAACA CCAACGTGGC CTTCTGCTCT GTGCTACGCA GCCGCCTGGG AAGCCACCCT CTGCTCTTCT 001200 001201 CAGGGGAGGT AGACTGCACA GACCCCCAAG CCCCATCCAC ACAGCCCCCG ACCTGCTATG TGGAGCTCAA GACCTCCAAG 001280 001281 GAGATGCAAA GCCCTGGCCA ATGGAGGAGT TTCTACAGGT TCAGGATCGG GGTGGGCAGG GCGAGAGCTT AGGCTTGAAG 001360 001361 GCTGGGAAAG GGACTTGGGG AGGAGGGTGA AGGCAGAATG GAGGGTGCAC GAGGGGTCCC ACTGATCCCT TGCTTTTCCT 001440 001441 GTCAGACACA AGCTCCTGAA ATGGTGGGCT CAGTCATTCC TCCCAGGGGT CCCGAATGTT GTTGCTGGCT TCCGTAACCC 001520 001521 AGACGGTTTT GTCTCTTCCC TCAAGACCTT TCCTACCATG AAGATGTTTG AATATGTCAG GGTAAGGGAA CGATGTTGCA 001600 001601 GCTCCCACCC GTATCCCCAA ACACCAAGAC CACAGGTCTA GCATCCAGGG CAACAGCCTG CCTTCTCTCC TCCCACCACC 001680 001681 CCCACTGCCC ATCTTCTGCC TCCTCCTCTG CCTGCTCCAG AATGACCGTG ACGGCTGGAA TCCCTCTGTG TGCATGAACT 001760 001761 TCTGTGCCGC CTTCCTTAGC TTTGCCCAGA GCACGGTTGT CCAGGATGAC CCCAGGCTCG TTCATCTCTT CTCTTGGGAG 001840 001841 CCTGGCGGCC CAGTCACCGT GTCTGTACAC CAAGATGCAC CTTACGCCTT CCTGCCCATA TGGTATGTGG AAGCTATGAC 001920 001921 TCAGGACCTC CCATCACCCC CCAAGACTCC CTCTCCCAAA TAGTAATGCT TTAGAGGGAG GCAGTCATAT CTCTGTGTGC 002000 002001 AGATAATAAA AGCATATTTC TAAGAGGTTC |
Predicted Small Protein
Name | NONHSAT117117_smProtein_1592:1756 |
Length | 55 |
Molecular weight | 5449.273 |
Aromaticity | 0.0 |
Instability index | 75.1740740741 |
Isoelectric point | 8.96820068359 |
Runs | 7 |
Runs residual | 0.0330623306233 |
Runs probability | 0.0164408105585 |
Amino acid sequence | MLQLPPVSPNTKTTGLASRATACLLSSHHPHCPSSASSSACSRMTVTAGIPLCA |
Secondary structure | LLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEELLLEELL |
PRMN | - |
PiMo | - |