NONHSAT117299
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT117299 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1494 nt |
Genomic location |
chr6_mann_hap4+:1660994..1662711 |
Exon number |
3 |
Exons |
1660994..1661082,1661152..1662411,1662567..1662711 |
Genome context |
|
Sequence |
000001 GGCGCTGCGG GAGGCCCTGG AGCGCGGCGG TGATGGCGGG GCCGGTGAAG GACCGCGAGG CCTTCCAGAG GCTCAACTTC 000080
000081 CTGTACCAGG CCGCCCATTG TGTCCTTGCC CAGGACCCCG AGAACCAGGC GCTGGCGAGG TTTTACTGCT ACACTGAGAG 000160 000161 GACCATTGCG AAGCGGCTCG TCTTGCGGCG GTGAGACAGC CACGGGGCGG GCGGCGGGCG GGACGCGGGA GGAACGCGAG 000240 000241 AGGGAGCGCG GGCGCCAGAC CACTATCCTC CTCCGCCCCC AGGGATCCCT CGGTGAAGAG GACTCTCTGT CGAGGCTGCT 000320 000321 CTTCCCTCCT CGTCCCGGGC CTCACCTGCA CCCAGCGCCA GAGACGTGAG TGCTCCAACG GAGGTGGAAG ACTGCGGAGC 000400 000401 ATTGGGGGCG CGGAGGGGGG CGGGGTGGGG GGCGGGCACT GGAGGCCAAC AGCGCCTTTC TCACTGTAGA TGGATGTTGG 000480 000481 GTGTGGGATT CGCAGGAGTC TTCCTTCTTC GGGTTTGGAT TAAGTTCCTA ACGCCACTTG CACAAACTAG GGTTTGGGCT 000560 000561 CGGCTTTTTT TTTTTTTTTT CTTCCAGTGT GGGCAATAAA TAATAACTTT TAAGAGGCAA CCCCACCCAT GCACAATAAT 000640 000641 AGATGTTGTT CGGCTTTGTG GAGGACGATT CCCATCACCa ttcatttatt aagcaaatac ttattttcta aaatgtgtca 000720 000721 ggtactgtgc tagATTCATT ATTCTCATTG AAATTACGGT CTGATGGGAC AGACTAAGAA ACAAAATGGT GTAGAAAAAG 000800 000801 ATTAACTGGG GGAGTAGAAT GCTCACTTAC TCATGCCAGT GGTGGCGAAG TTTATGATAA GCAAAGGGAG TGAGAGATGG 000880 000881 AAATTCTAGg catgtgtgca gactctgaga caagagagct tgtggtgctg tcaaagaaat gagagttcag gaggctggag 000960 000961 tttgaggtag gagggcaaaa catgagactg gagggggaaa caggccagtt cttgaagTCT TGTTAGGGAG TTTGAACTTT 001040 001041 ATCTTAAAGA GTTCCAGGAA ATCGATGGAG CTTATGCCGA GGCCTGACAC CATCAAATGT GCATTCAAAT TGGGGGTGTG 001120 001121 GTGGGGGAGC GGGGATACCT ACTGAAAAAC ACTGGAGGCA AAACTGGCAG CAAGAGACCG TTACTTCTAA ACGTGGACAG 001200 001201 TCTTTTTCCC ATGTTCACCC TAGGCTGCAG GGGACAGCGC TGGACCGTAC AGACCTGCCT AACATGCCAG CGCAGCCAAC 001280 001281 GCTTCCTCAA TGATCCCGGG CATTTACTCT GGGGAGACAG GCCTGAGGCC CAGCTCGGGA GCCAAGCAGA TTCCAAACCA 001360 001361 CTACAACCCT TGCCAAACAC AGCCCACTCC ATTTCAGACC GCCTTCCTGA GGAGAAAATG CAGACGAAGG GTTCCAGTAA 001440 001441 CCAGTGATGG ATTCACCTCA TCTCCCAAAT AAAGTTTACT TGTTTTACAT TCCA |
Predicted Small Protein
Name | NONHSAT117299_smProtein_1289:1471 |
Length | 61 |
Molecular weight | 6664.5298 |
Aromaticity | 0.0833333333333 |
Instability index | 77.0333333333 |
Isoelectric point | 10.530090332 |
Runs | 7 |
Runs residual | 0.0330673758865 |
Runs probability | 0.0472909884675 |
Amino acid sequence | MIPGIYSGETGLRPSSGAKQIPNHYNPCQTQPTPFQTAFLRRKCRRRVPVTSDGFTSSPK |
Secondary structure | LLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLEELLLL |
PRMN | - |
PiMo | - |