NONHSAT117445
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT117445 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1682 nt |
Genomic location |
chr6_mann_hap4-:3037705..3040174 |
Exon number |
4 |
Exons |
3037705..3038020,3038210..3038359,3038840..3039412,3039532..3040174 |
Genome context |
|
Sequence |
000001 GGGCGCCCGA CAGGGACCTC ACAAGCCCCC AAGCAGGGGC AACAGGTGTT TTGGAGATTA GAGACCCTAG CCTTGTTCCT 000080
000081 CAGGCTCCTC TTAAAGAATC TGACCCCTGA GGGTGCTGGG TAGAGTGAGG TCGACAGGAG CGGAAGGTCT GGAGTGGGTG 000160 000161 GGGCGGAGTG GGAGGGACGC CTAGAGATGG CAGGAGGAAG ACCTGGGCGC TCTTAACCAC CCCCAACGCC CTTGTCTGCA 000240 000241 TGTCTTTTTC TCTGTCTCCT CCTTTTCTGT TTCTTCTCCC AGACAGGTGA AGAAACAAGA AAACTAAGAA ATCCGAGCGG 000320 000321 TTGGAGGGGG AGTCTGTGTG GATGGGATGG GGACGCCGGG GGAGGGGCTG GGCCGCTGCT CCCATGCCCT GATCCGGGGA 000400 000401 GTCCCAGAGA GCCTGGCGTC GGGGGAAGGT GCGGGGGCTG GCCTTCCCGC TCTGGATCTG GCCAAAGCTC AAAGGGAGCA 000480 000481 CGGGGTGCTG GGAGGTAAAC TGAGGCAACG ACTGGGGCTA CAGCTGCTAG AACTGCCACC TGAGGAGTCA TTGCCGCTGG 000560 000561 GACCGCTGCT TGGCGACACG GCCGTGATCC AAGGGGACAC GGCCCTAATC ACGCGGCCCT GGAGCCCCGC TCGTAGGCCA 000640 000641 GAGGTCGATG GAGTCCGCAA AGCCCTGCAA GACCTGGGGC TCCGAATTGT GGAAATAGGA GACGAGAACG CGACGCTGGA 000720 000721 TGGCACTGAC GTTCTCTTCA CCGGTGAGGC TGGGGGGAGG CATAGGTCTT GGCACAGGGA AGTAGAGTTT GGGAGACTCG 000800 000801 GCCGTCTGGA GCCTTGTTTC TAACTCACTC CCGCCCTCAA ACCTCCGCGG CCTCCCGGAC TCAGGCCGGG AGTTTTTCGT 000880 000881 AGGCCTCTCC AAATGGACCA ATCACCGAGG AGCTGAGATC GTGGCGGACA CGTTCCGGGT GCGGAGCGGG ACCAGCCTAG 000960 000961 GGAGGGAGGG GGTGCAGGTG GGGGTCGGAA GGGCCTGGGC GCCCGCTGAG GAAATGAGAG GCAGAGAGCA GCCTATGTTT 001040 001041 GAAGATACCC CATCACCCCT CCCGCGCCCC TGAATACCTC CCTTCGCTCT CCCTAGGACT TCGCCGTCTC CACTGTGCCA 001120 001121 GTCTCGGGTC CCTCCCACCT GCGCGGTCTC TGCGGCATGG GGGGACCTCG CACTGTTGTG GCAGGCAGCA GCGACGCTGC 001200 001201 CCAAAAGGCT GTCCGGGCAA TGGCAGTGCT GACAGATCAC CCATATGCCT CCCTGACCCT CCCAGATGAC GCAGCTGCTG 001280 001281 ACTGTCTCTT TCTTCGTCCT GGGTTGCCTG GTGTGCCCCC TTTCCTCCTG CACCGTGGAG GTGGGGATCT GCCCAACAGC 001360 001361 CAGGAGGCAC TGCAGAAGCT CTCTGATGTC ACCCTGGTAC CTGTGTCCTG CTCAGAACTG GAGAAGGCTG GCGCCGGGCT 001440 001441 CAGCTCCCTC TGCTTGGTGC TCAGCACACG CCCCCACAGC TGAGGGCCTG GCCTTGGGGT ACTGCTGGCC AGGGGTAGGA 001520 001521 TAGTATAGGA AGTAGAAGGG GAAGGAGGGT TAGATAGAGA ATGCTGAATA GGCAGTAGTT GGGAGAGAGC CTCAATATTG 001600 001601 GGGGAGGGGA GAGTGTAGGG AAAAGGATCC ACTGGGTGAA TCCTCCCTCT CAGAACCAAT AAAATAGAAT TGACCTTTTA 001680 001681 GA |
Predicted Small Protein
Name | NONHSAT117445_smProtein_1265:1522 |
Length | 86 |
Molecular weight | 9099.5968 |
Aromaticity | 0.0941176470588 |
Instability index | 68.7364705882 |
Isoelectric point | 8.51434326172 |
Runs | 13 |
Runs residual | 0.0163992869875 |
Runs probability | 0.0456497221204 |
Amino acid sequence | MTQLLTVSFFVLGCLVCPLSSCTVEVGICPTARRHCRSSLMSPWYLCPAQNWRRLAPGSA PSAWCSAHAPTAEGLALGYCWPGVG |
Secondary structure | LEEEEEEEEEEEEEEEELLLLLEEEEEELLLLLLHHHHLLLLLLLLLLLLLHHHHLLLLL LLLLLLLLLLLHHHHHLLEELLLLL |
PRMN | - |
PiMo | - |