NONHSAT117816

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT117816

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

833 nt

Genomic location

chr6_mcf_hap5-:4010947..4011779

Exon number

1

Exons

4010947..4011779

Genome context

Sequence
000001 GCAGTGCTAA TATTATCAAT TATTAGTGTC TCTGCAACTT CAGTATCTCT TATTATTCTA ATTCTACTAA CTATTCTCGA 000080
000081 GTTCGCTGTC GCTCTTATTC AAGCTTATGT CTTCACACTA TTAGTAAGTC TTTATTTGCA TGATAATACA TAATGACCCG 000160
000161 CCAAACTCAT GCCTACCATA TAGCTGTACC TAGCCCTTGA CCACTAACAG GAGCTCTCTC GGCTCTCCTA ATAACATCTG 000240
000241 GCCTGGCCAT ATGATTTCAC TTTAATTCTA CCACTCTTTT AACTTTAGGC CTACTAACCA ACACACTGAC TATACATCAG 000320
000321 TGATGACGTG ATGTTGTCCG AGAAAGTGTA TTACAAGGCC ACCACACAAC AATTGTCCTA AAAGACCTCT GATACGGGAT 000400
000401 GCTTCTATTT ATTATCTCAA AAGTATTCTT CTTCGCTGGT TTTTTTCTGG GCATTTTATC ACTCCAGTTT AGCACCGACC 000480
000481 CCAGAATTAG GAGGACATTG ACCCCCAACA GGTATTCTTC CCCTGAACCC TTTAGAAGTA TCTCTCCTAA ATACGTCTGT 000560
000561 ATTACTTGCA TCAGGAGTTT CAATTACTTG AGCCCACCAC AGCCTAATAG AAGGTAACCA AAAACAAATA ATTCAAGCAG 000640
000641 TACTTATCAC GATCCTCTTA GGAGTCTATT TCACTCTTCT ACAAGTCTCA GAATATTTCG AGGCCCCCTT TATTATCTCT 000720
000721 GATGGAATCT ATGGCTCAAC ATTCTTTGTA GCCACAGGCT TTCATGGACT TCATGTTATT ATTGGATCAA CAATTCTCAC 000800
000801 CATCTGCCTT CTTGCCAATT AAAATTTCAT TTT
[back to top]

Predicted Small Protein

Name NONHSAT117816_smProtein_398:616
Length 73
Molecular weight 8450.8605
Aromaticity 0.166666666667
Instability index 76.4527777778
Isoelectric point 10.8981323242
Runs 9
Runs residual 0.0159164639092
Runs probability 0.0622583367682
Amino acid sequence MLLFIISKVFFFAGFFLGILSLQFSTDPRIRRTLTPNRYSSPEPFRSISPKYVCITCIRS
FNYLSPPQPNRR
Secondary structure LEEEEEEHHHHHHHHHHHHEEEEELLLLLEEELLLLLLLLLLLLLLLLLLLEEEEEEEEE
LLLLLLLLLLLL
PRMN LHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLL
PiMo i???????????????????????????????????????????????????????????
????????????