NONHSAT117886
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT117886 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2791 nt |
Genomic location |
chr6_qbl_hap6+:800473..804635 |
Exon number |
3 |
Exons |
800473..800651,801016..801110,802119..804635 |
Genome context |
|
Sequence |
000001 ACTGCCCAAC TGCCACTGCC CAGCCTGATG GCTCCACATC TCAGGAGTAG GCTCTGATTC CTTGGGGCCC CAGGAGCCTC 000080
000081 TCAGGAGTCT ACATCCCAAG ATGTTCTAAC TTCCAGAGTC TCCAAGCCCA TCAAGAGCAA GTTTTGCTAA AAGTGTTCTG 000160 000161 AGAGCTTATG AAGCACATGG ACAAGGAAGG GTTGTGCATC CGGCTTTCCA CCTTAAACTG GTTTCTATGG TGCTTCATCG 000240 000241 ATGAGATAAG GATGCATAGG AGACCCCAGG CCAGGAGTTC CTTCAGGACA CACTGTCCTA GGCCTGGGCC CTGGAGGAGG 000320 000321 ACATGGTGAT GAGGCACCCT GAGGCCTCCA TGGGGGAACT GAGAAGCATG CACTGTGACC TGCACACCCA GGTGGGCTTC 000400 000401 AGCACCAAGT CTCCTCCTGT GTCACCCTGC GGGGCAGTAA ATAGTGGGAA GTGCCCAGAC CTCACCAGCC CTGCTCCCTG 000480 000481 GGCCTTCCTC CAGCCCCTCC TCTCCCTCCT CCTCTAAGAA GCTTCTGAAA CCAGGCTGCC TGAGCCTAGG GCAAAAGCTG 000560 000561 ACCTTGGGTT TACTGGACAT GCCTCAGAGA CAATGAGACG TGAGCAAGAC TCTTCCAAGC CCCTCCCCTG TACCCTCCTG 000640 000641 CTCTCACTCC TGAAAGCCCC AGAAGGACAC TGGAGGGGTC AGATCCATCT GTGCAAGCCC ACAACCACAC CTGTGAGTAC 000720 000721 CAGCAGCCCT GGAGAGCAGC AGGGGGCCTT CACTCCTGAG CACCCCTCCA AGGGCCTAAA ATCAGTGTCA GAGACCCTAA 000800 000801 GAGAATCTAG GGAGAGGGCA TAGGTGAAAC CCTGGCCCAG AGCCAGAATT GATTGCTCAG CTGAGTGTGG GAACAGTCCA 000880 000881 GCCCTGGCAT GGAGATCCCC CAGAGGAGTG GAGGGTGTCT CATCCACTGT GGAGATAAGC CCCCATATTG CGTGGCAAAG 000960 000961 GGGCTAGGTA ACAGTTAAGG CCTCATCCAT CTGAGCTCTG AATCAAGGCT AAAGCCCAGG CTAAGCAGCC CTGGGGCAAG 001040 001041 AGTGTGAGGC AGGAAGACTG AGTCAGCCTG AACCCTGGGG GCTGTCCCTG GAGTGACTTG AGCTTCCCTG ACAGCTTCCC 001120 001121 CACTCTAGGC TGCACACACA CCTCGCTCTG GGAGTAGCAG CCTGCAGGAG TGTCCTCAGC ATTAGACCAG GGGGACCACA 001200 001201 CGGGGACCCT GAGGACTGCA GGGACCCAGG TCTGTGGGGT CCAGCCTGGC AAAAGCAAGA TGTTCTCAAT GGAAAAGCTG 001280 001281 ACCAAATCTG CTTTCCTTTC AGCCAAACCT GAGCAAGCAC CCCCACCACC CAGGCCTCTG CAGATATCCC CCAGCATTGA 001360 001361 GACCCTCCCC AAGGGGATGG GCTGCTTCTC CCTGGCCCAC AGCCCAGCTC CAGCAGCCCA TGGGTATAGC CCTCCTGAAA 001440 001441 CAGGAGCCTC ATCCTCCCTC ACCCTCACCT GGCTATGCTG TACCCAAGGC CAAAGCCCAG AGGCATAAGG GAGCTTCTGC 001520 001521 AGAGCCCAGG ACAGCAGGCT GCTCTCTGGG GGCCCTGGGG ACTCAGAGTG TGGCCAGCCC ATCCCCAGCT CAGGATAGAC 001600 001601 CACAGAGTGC TTGGTGATTC CTGCATTGGA ACTCCCTCTC TAAGCTCCCC ATGGACCTGG ACCTCAGAGG TCTGTGGTTT 001680 001681 TCACAGTAGA GCTTGGAGCA GAGATGCTAG GCCCCTATCA CTTCCATATG TGTCCTGGAC ACCTCTAAGA TCATAGGACT 001760 001761 GGCCTAGCCC CCAATACCAG ACACTGCCCA GCCCCCTGAT AGCCCAGAGG TAGGGCCAGA GACAACTCTC CTGCATGTGA 001840 001841 TGCCTACAGC TGATCACTCT TGGCAGACAG TGAACATCAC GGCCCAGAAG GAGCCAGGGC AGCACTTGGC AAGCTGCCCC 001920 001921 AAAGCCCCAG AGAGCTCCTT AGACATGGAA AGTCAATACT GATGGGGAAG CTGGACACTT GGAGGCCACT GGAGGGAGGG 002000 002001 GTGAGCATGG TGTCCCCACA GCCCAGGCCA CCCAGCAGCA TGCCCTGCAT CCATGGTCCC AACCTGTAGG GCAGAACCCC 002080 002081 CCTCTCAATG CACAATTCCT AGACCCAGAG GGCCCTAGCC CAGACTCAAC CTGAGCCCTG AAAGGGAAGG GGCACCAGGG 002160 002161 GTGCCTTGGG GCCTCCAGCA GCAGCCAAGA TACACAGGAG ATGGAGCCCC CTGTGGCCCT GGCCAGAACT AGTATTTGGC 002240 002241 TTAAGGCGGA GCAAGCCCCC TTGGAGCACT GCGTACATAC CCGGGGCCTA TGTGTGCCTG GCAAGGCCAA GCTGATGATG 002320 002321 TTACCAAGCT CAAACTACCA CTGGCCACCT TGGTGAGGGT GGGGCAGAAA CACGTGGACC AGCCACCAAC CTCATCCATT 002400 002401 CAAGGAAGCA GAAATGGTCA GGCTCCTGCA GGATAAGTGG CCACCACCAG ACCACCAATG GGGCAGAGTT CTGAGGCCCA 002480 002481 AGCAGATGGC ACTGGGGCCC TGCTTCCAGG GTCCACAATC TGCTCCAGGA CACAAGACTG AAGAAAACTA AGCAAATGAG 002560 002561 AGTCCAGGAG GCTGGATCCC TCATCTGCCA TTCTTGGCAG TTGCATTTTG TGGTCAGAAA AAGTCAGGAA ACTTGGCTCT 002640 002641 ACTCACTGCA GGAGGCTCCA AGGTGGGACC AGAGCTTCCA GCATAGATTC AACAATGCCT AAGAATGCCT CTTCTTGGGG 002720 002721 AAAAGGACCC CTTCCTTGGC CTCAAAGCCC CCACTTATTT TGATTAAAGC ACAATAAAGT CTTTGTTGTT A |
Predicted Small Protein
Name | NONHSAT117886_smProtein_1259:1507 |
Length | 83 |
Molecular weight | 8583.759 |
Aromaticity | 0.0609756097561 |
Instability index | 77.6231707317 |
Isoelectric point | 6.69793701172 |
Runs | 9 |
Runs residual | 0.0261456023651 |
Runs probability | 0.030353883295 |
Amino acid sequence | MFSMEKLTKSAFLSAKPEQAPPPPRPLQISPSIETLPKGMGCFSLAHSPAPAAHGYSPPE TGASSSLTLTWLCCTQGQSPEA |
Secondary structure | LLLHHHHLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLL LLLLLLLEEEEEEELLLLLLLL |
PRMN | - |
PiMo | - |