NONHSAT117887
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT117887 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2696 nt |
Genomic location |
chr6_qbl_hap6+:800473..804635 |
Exon number |
2 |
Exons |
800473..800651,802119..804635 |
Genome context |
|
Sequence |
000001 ACTGCCCAAC TGCCACTGCC CAGCCTGATG GCTCCACATC TCAGGAGTAG GCTCTGATTC CTTGGGGCCC CAGGAGCCTC 000080
000081 TCAGGAGTCT ACATCCCAAG ATGTTCTAAC TTCCAGAGTC TCCAAGCCCA TCAAGAGCAA GTTTTGCTAA AAGTGTTCTG 000160 000161 AGAGCTTATG AAGCACATGG AGTTCCTTCA GGACACACTG TCCTAGGCCT GGGCCCTGGA GGAGGACATG GTGATGAGGC 000240 000241 ACCCTGAGGC CTCCATGGGG GAACTGAGAA GCATGCACTG TGACCTGCAC ACCCAGGTGG GCTTCAGCAC CAAGTCTCCT 000320 000321 CCTGTGTCAC CCTGCGGGGC AGTAAATAGT GGGAAGTGCC CAGACCTCAC CAGCCCTGCT CCCTGGGCCT TCCTCCAGCC 000400 000401 CCTCCTCTCC CTCCTCCTCT AAGAAGCTTC TGAAACCAGG CTGCCTGAGC CTAGGGCAAA AGCTGACCTT GGGTTTACTG 000480 000481 GACATGCCTC AGAGACAATG AGACGTGAGC AAGACTCTTC CAAGCCCCTC CCCTGTACCC TCCTGCTCTC ACTCCTGAAA 000560 000561 GCCCCAGAAG GACACTGGAG GGGTCAGATC CATCTGTGCA AGCCCACAAC CACACCTGTG AGTACCAGCA GCCCTGGAGA 000640 000641 GCAGCAGGGG GCCTTCACTC CTGAGCACCC CTCCAAGGGC CTAAAATCAG TGTCAGAGAC CCTAAGAGAA TCTAGGGAGA 000720 000721 GGGCATAGGT GAAACCCTGG CCCAGAGCCA GAATTGATTG CTCAGCTGAG TGTGGGAACA GTCCAGCCCT GGCATGGAGA 000800 000801 TCCCCCAGAG GAGTGGAGGG TGTCTCATCC ACTGTGGAGA TAAGCCCCCA TATTGCGTGG CAAAGGGGCT AGGTAACAGT 000880 000881 TAAGGCCTCA TCCATCTGAG CTCTGAATCA AGGCTAAAGC CCAGGCTAAG CAGCCCTGGG GCAAGAGTGT GAGGCAGGAA 000960 000961 GACTGAGTCA GCCTGAACCC TGGGGGCTGT CCCTGGAGTG ACTTGAGCTT CCCTGACAGC TTCCCCACTC TAGGCTGCAC 001040 001041 ACACACCTCG CTCTGGGAGT AGCAGCCTGC AGGAGTGTCC TCAGCATTAG ACCAGGGGGA CCACACGGGG ACCCTGAGGA 001120 001121 CTGCAGGGAC CCAGGTCTGT GGGGTCCAGC CTGGCAAAAG CAAGATGTTC TCAATGGAAA AGCTGACCAA ATCTGCTTTC 001200 001201 CTTTCAGCCA AACCTGAGCA AGCACCCCCA CCACCCAGGC CTCTGCAGAT ATCCCCCAGC ATTGAGACCC TCCCCAAGGG 001280 001281 GATGGGCTGC TTCTCCCTGG CCCACAGCCC AGCTCCAGCA GCCCATGGGT ATAGCCCTCC TGAAACAGGA GCCTCATCCT 001360 001361 CCCTCACCCT CACCTGGCTA TGCTGTACCC AAGGCCAAAG CCCAGAGGCA TAAGGGAGCT TCTGCAGAGC CCAGGACAGC 001440 001441 AGGCTGCTCT CTGGGGGCCC TGGGGACTCA GAGTGTGGCC AGCCCATCCC CAGCTCAGGA TAGACCACAG AGTGCTTGGT 001520 001521 GATTCCTGCA TTGGAACTCC CTCTCTAAGC TCCCCATGGA CCTGGACCTC AGAGGTCTGT GGTTTTCACA GTAGAGCTTG 001600 001601 GAGCAGAGAT GCTAGGCCCC TATCACTTCC ATATGTGTCC TGGACACCTC TAAGATCATA GGACTGGCCT AGCCCCCAAT 001680 001681 ACCAGACACT GCCCAGCCCC CTGATAGCCC AGAGGTAGGG CCAGAGACAA CTCTCCTGCA TGTGATGCCT ACAGCTGATC 001760 001761 ACTCTTGGCA GACAGTGAAC ATCACGGCCC AGAAGGAGCC AGGGCAGCAC TTGGCAAGCT GCCCCAAAGC CCCAGAGAGC 001840 001841 TCCTTAGACA TGGAAAGTCA ATACTGATGG GGAAGCTGGA CACTTGGAGG CCACTGGAGG GAGGGGTGAG CATGGTGTCC 001920 001921 CCACAGCCCA GGCCACCCAG CAGCATGCCC TGCATCCATG GTCCCAACCT GTAGGGCAGA ACCCCCCTCT CAATGCACAA 002000 002001 TTCCTAGACC CAGAGGGCCC TAGCCCAGAC TCAACCTGAG CCCTGAAAGG GAAGGGGCAC CAGGGGTGCC TTGGGGCCTC 002080 002081 CAGCAGCAGC CAAGATACAC AGGAGATGGA GCCCCCTGTG GCCCTGGCCA GAACTAGTAT TTGGCTTAAG GCGGAGCAAG 002160 002161 CCCCCTTGGA GCACTGCGTA CATACCCGGG GCCTATGTGT GCCTGGCAAG GCCAAGCTGA TGATGTTACC AAGCTCAAAC 002240 002241 TACCACTGGC CACCTTGGTG AGGGTGGGGC AGAAACACGT GGACCAGCCA CCAACCTCAT CCATTCAAGG AAGCAGAAAT 002320 002321 GGTCAGGCTC CTGCAGGATA AGTGGCCACC ACCAGACCAC CAATGGGGCA GAGTTCTGAG GCCCAAGCAG ATGGCACTGG 002400 002401 GGCCCTGCTT CCAGGGTCCA CAATCTGCTC CAGGACACAA GACTGAAGAA AACTAAGCAA ATGAGAGTCC AGGAGGCTGG 002480 002481 ATCCCTCATC TGCCATTCTT GGCAGTTGCA TTTTGTGGTC AGAAAAAGTC AGGAAACTTG GCTCTACTCA CTGCAGGAGG 002560 002561 CTCCAAGGTG GGACCAGAGC TTCCAGCATA GATTCAACAA TGCCTAAGAA TGCCTCTTCT TGGGGAAAAG GACCCCTTCC 002640 002641 TTGGCCTCAA AGCCCCCACT TATTTTGATT AAAGCACAAT AAAGTCTTTG TTGTTA |
Predicted Small Protein
Name | NONHSAT117887_smProtein_1379:1660 |
Length | 94 |
Molecular weight | 10613.0681 |
Aromaticity | 0.10752688172 |
Instability index | 55.0322580645 |
Isoelectric point | 10.7290649414 |
Runs | 15 |
Runs residual | 0.0303663878933 |
Runs probability | 0.0252075605017 |
Amino acid sequence | MLYPRPKPRGIRELLQSPGQQAALWGPWGLRVWPAHPQLRIDHRVLGDSCIGTPSLSSPW TWTSEVCGFHSRAWSRDARPLSLPYVSWTPLRS |
Secondary structure | LLLLLLLLLLHHHHHLLLHHHHEEELLLLEEEELLLLLEEELEEELLLLLLLLLLLLLLL EEEHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |