NONHSAT117888
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT117888 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1880 nt |
Genomic location |
chr6_qbl_hap6+:800473..804635 |
Exon number |
4 |
Exons |
800473..800651,801016..801110,802119..802235,803147..804635 |
Genome context |
|
Sequence |
000001 ACTGCCCAAC TGCCACTGCC CAGCCTGATG GCTCCACATC TCAGGAGTAG GCTCTGATTC CTTGGGGCCC CAGGAGCCTC 000080
000081 TCAGGAGTCT ACATCCCAAG ATGTTCTAAC TTCCAGAGTC TCCAAGCCCA TCAAGAGCAA GTTTTGCTAA AAGTGTTCTG 000160 000161 AGAGCTTATG AAGCACATGG ACAAGGAAGG GTTGTGCATC CGGCTTTCCA CCTTAAACTG GTTTCTATGG TGCTTCATCG 000240 000241 ATGAGATAAG GATGCATAGG AGACCCCAGG CCAGGAGTTC CTTCAGGACA CACTGTCCTA GGCCTGGGCC CTGGAGGAGG 000320 000321 ACATGGTGAT GAGGCACCCT GAGGCCTCCA TGGGGGAACT GAGAAGCATG CACTGTGACC TGCACACCCA GCCAAACCTG 000400 000401 AGCAAGCACC CCCACCACCC AGGCCTCTGC AGATATCCCC CAGCATTGAG ACCCTCCCCA AGGGGATGGG CTGCTTCTCC 000480 000481 CTGGCCCACA GCCCAGCTCC AGCAGCCCAT GGGTATAGCC CTCCTGAAAC AGGAGCCTCA TCCTCCCTCA CCCTCACCTG 000560 000561 GCTATGCTGT ACCCAAGGCC AAAGCCCAGA GGCATAAGGG AGCTTCTGCA GAGCCCAGGA CAGCAGGCTG CTCTCTGGGG 000640 000641 GCCCTGGGGA CTCAGAGTGT GGCCAGCCCA TCCCCAGCTC AGGATAGACC ACAGAGTGCT TGGTGATTCC TGCATTGGAA 000720 000721 CTCCCTCTCT AAGCTCCCCA TGGACCTGGA CCTCAGAGGT CTGTGGTTTT CACAGTAGAG CTTGGAGCAG AGATGCTAGG 000800 000801 CCCCTATCAC TTCCATATGT GTCCTGGACA CCTCTAAGAT CATAGGACTG GCCTAGCCCC CAATACCAGA CACTGCCCAG 000880 000881 CCCCCTGATA GCCCAGAGGT AGGGCCAGAG ACAACTCTCC TGCATGTGAT GCCTACAGCT GATCACTCTT GGCAGACAGT 000960 000961 GAACATCACG GCCCAGAAGG AGCCAGGGCA GCACTTGGCA AGCTGCCCCA AAGCCCCAGA GAGCTCCTTA GACATGGAAA 001040 001041 GTCAATACTG ATGGGGAAGC TGGACACTTG GAGGCCACTG GAGGGAGGGG TGAGCATGGT GTCCCCACAG CCCAGGCCAC 001120 001121 CCAGCAGCAT GCCCTGCATC CATGGTCCCA ACCTGTAGGG CAGAACCCCC CTCTCAATGC ACAATTCCTA GACCCAGAGG 001200 001201 GCCCTAGCCC AGACTCAACC TGAGCCCTGA AAGGGAAGGG GCACCAGGGG TGCCTTGGGG CCTCCAGCAG CAGCCAAGAT 001280 001281 ACACAGGAGA TGGAGCCCCC TGTGGCCCTG GCCAGAACTA GTATTTGGCT TAAGGCGGAG CAAGCCCCCT TGGAGCACTG 001360 001361 CGTACATACC CGGGGCCTAT GTGTGCCTGG CAAGGCCAAG CTGATGATGT TACCAAGCTC AAACTACCAC TGGCCACCTT 001440 001441 GGTGAGGGTG GGGCAGAAAC ACGTGGACCA GCCACCAACC TCATCCATTC AAGGAAGCAG AAATGGTCAG GCTCCTGCAG 001520 001521 GATAAGTGGC CACCACCAGA CCACCAATGG GGCAGAGTTC TGAGGCCCAA GCAGATGGCA CTGGGGCCCT GCTTCCAGGG 001600 001601 TCCACAATCT GCTCCAGGAC ACAAGACTGA AGAAAACTAA GCAAATGAGA GTCCAGGAGG CTGGATCCCT CATCTGCCAT 001680 001681 TCTTGGCAGT TGCATTTTGT GGTCAGAAAA AGTCAGGAAA CTTGGCTCTA CTCACTGCAG GAGGCTCCAA GGTGGGACCA 001760 001761 GAGCTTCCAG CATAGATTCA ACAATGCCTA AGAATGCCTC TTCTTGGGGA AAAGGACCCC TTCCTTGGCC TCAAAGCCCC 001840 001841 CACTTATTTT GATTAAAGCA CAATAAAGTC TTTGTTGTTA |
Predicted Small Protein
Name | NONHSAT117888_smProtein_563:844 |
Length | 94 |
Molecular weight | 10613.0681 |
Aromaticity | 0.10752688172 |
Instability index | 55.0322580645 |
Isoelectric point | 10.7290649414 |
Runs | 15 |
Runs residual | 0.0303663878933 |
Runs probability | 0.0252075605017 |
Amino acid sequence | MLYPRPKPRGIRELLQSPGQQAALWGPWGLRVWPAHPQLRIDHRVLGDSCIGTPSLSSPW TWTSEVCGFHSRAWSRDARPLSLPYVSWTPLRS |
Secondary structure | LLLLLLLLLLHHHHHLLLHHHHEEELLLLEEEELLLLLEEELEEELLLLLLLLLLLLLLL EEEHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |