NONHSAT117900

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT117900

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

553 nt

Genomic location

chr6_qbl_hap6-:1006398..1007083

Exon number

2

Exons

1006398..1006840,1006974..1007083

Genome context

Sequence
000001 CCTAGCAGCA CATCCTCTTT CCTGTGTCAA GAAGCATCGT CCGGGGAGGT GAGAAGAAGA CAGTCCTCCC TAGAATTGAA 000080
000081 GAACCAGGGA GAAGCAGATG GGCTGGGCAG ATCAAGCACA AACCTGAGAT CCAACTGTCC CTCTTATGCG CCTGGGTTTC 000160
000161 TTCACTGGAC ACCAGTATGA GTCAACTTTC CTGTAAAGCA GAACAAGCAC GAGATTGGAC CATGTTAGAG GAGGAATGGT 000240
000241 GTCATCTCCA CTTCTGGAGA GATCCCTGTC CCCGTGTTCG GGGGAAGGAC CAAGCCTCAC TCCCATGCAG AGAAGAGGCT 000320
000321 CTGACTGTAA CTGCACCTGT GGAGAGGTGA GGACCTGTCC CCTCTACACC GATGGCCAGA GCCTCCAGAG TGGGGCCAGG 000400
000401 TTTTTCCCTC AGCTGTGTCC TGTCAGGTTC ATCTAGGCCT CAAAGAATAG ACCCTGGACA TTGCCTCTGG CAATGTGAGC 000480
000481 TGGACACACA CCCAGATGTA AGGTAGCCCT GCCAAGTATC CTGGGGTTGC CAGTAGTTCT GGGTGCTCAG TGT
[back to top]

Predicted Small Protein

Name NONHSAT117900_smProtein_176:349
Length 58
Molecular weight 6728.5938
Aromaticity 0.0701754385965
Instability index 50.8736842105
Isoelectric point 5.56707763672
Runs 8
Runs residual 0.0135964912281
Runs probability 0.0295884119413
Amino acid sequence MSQLSCKAEQARDWTMLEEEWCHLHFWRDPCPRVRGKDQASLPCREEALTVTAPVER
Secondary structure LLLLLLHHHHHHLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHEEELLLLLL
PRMN -
PiMo -