NONHSAT118305

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT118305

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

8477 nt

Genomic location

chr6_ssto_hap7-:1585165..1624908

Exon number

3

Exons

1585165..1592732,1593901..1594006,1624106..1624908

Genome context

Sequence
000001 CGGGGCGGCA AAACGTCCGC CCGGGCCCGA GGCGGGCGGA GGCAGCTGTG GTTACGTGCG GGGGGCCGGT GACGCAGTCG 000080
000081 CGGGGCGCTG GGACGCGGCT TGCGGAGCCG GCCGGCGAGC GCAGGCCCCA GGCTCGGGCG CGGCGGCGGG ACAGCACCTA 000160
000161 CCTTCCCGGC TTCGGGTCCG GGAGTGCGGG GCGCGGAGCC GCCGGAGCGC TGCCTCCCTC CTTCCTCCTC CCCTCGCCCC 000240
000241 CGCCCCGCGG CGCGACACAC AATACTCGCC GGAAGCGGAA GCCGCGCCGA GGCTCGTGTC AGTGGAAGCT GGGGTGTcgg 000320
000321 cgggcggccg cggccgggTC TAGCGGTGCC TGCGGAAGAA GGAGGAGGAG GGCTGGCGAT GAGAAGCAGC AGGGGGAATC 000400
000401 AAGGGCAAGA AGGGACCCAG AGGGGCAGGT GGCTGAGATG CTGGCGTCCA GGTGACCCGA GGAATCCTCT GGAGATACAG 000480
000481 GCCCGCGCAT GCGCGTGCTC GAGCGCTGAA GCCCATTGCC CGCAGGGCGC TGGACTGGCG CCCCGGCCGG CGAGGCTGTC 000560
000561 TAGTCCAGGC TCCAGGCCCC GGCTCTGGCC AGGCGCCGCC GCCTCCCGGT GCAGCTGAAA GTCGACGAAG AGGGCGGGGC 000640
000641 GGGGGCGGCT TGTGGACTTC CACACTTTTC CTCTCTTCGG GCCAGTCTGG GGAGAGGGTG GCTAGCTGTG GCGGCGGCCA 000720
000721 ATTACGTGGC GGACCTGCGG GGCTAAGCTG GCACGTCACT TCCGACTAGT GGAGTTTTTA GCCTTTTAAC ATTCAAGGAT 000800
000801 TAGagctccc tctttgccca ctagcagggc attagctggt gctgaagaca gtggctgctt ggcgagcctg gatctccaag 000880
000881 tgaccccctc agcaactcct gatgaacagG ACTGAAGCCA ATATTAAAGC AAGTCAACCA AAGGTTCTCT GGTGTAGACA 000960
000961 AGACAGCAAA AGGACAGACT ACCTTGTGGA ACCTAGCATT GTTCTCCTTC TGCAGCACTA AGTAACATTT GTTCTCCGTT 001040
001041 AAGATCTTTG CAAACCACAC ACAAGAATTG CTGGTCATCC TGCCAATAGA TGCTGCTCAC AGAACCAAAT TTCCTGTGCT 001120
001121 GAATTGTCAC TCATGGGCTT GAGAGTAGGA GACTGGAGAC CAAGGTGGCT AGAATCCAGT TGGGCCTGAT GTCTCCCTGT 001200
001201 TGAAAGGGCT CCTTGTGGAA TGAATAGCAC ATGGCTCCTG TGGTGGATCT GATAGTGGCA TAGCACCAAG TGATGCAGGC 001280
001281 CTGCCAGGGG CCACAGACAC AGAAGATGCT CCCGGGGTCC CCCATGTACT CCAGACACAC TGCAGGCCAC CTCTCCCAGC 001360
001361 AGGTTGCCAG TCATGGGCCC CATCATCATG ACTTCTGTCC AAGGTGTGCT CGGAAATCTC TTCCTTAACT GTGACTTTCT 001440
001441 GACAGGTGGA GGATGTGGTC AGGAGTGGGA AAAGGATTCG AGACGGGAAG AGGGAGGGGT TCAGGATGAA GAGAGATAAT 001520
001521 CTGTGCCACA GATGCTGGCC CTGCAGTTAG CTCCCACCTA GTCCGTGCAC ACACATTCTA ATCCCCTCCC ATTCCTTTAC 001600
001601 ATGCTGCGGC CAGAGAGGCC TTTCTCAAAG TGGAAGTCTC ATCCTCACTT CTCTGGTTAC AGTGCTGGGC CATGGTAACT 001680
001681 TACAAGGCTT AGCAGGAACT GTCTGCGCAC TCCCCCTTCC TGCCCACTAC CTTGTTTCCC TCCAGTTGCG AGAGAAaaca 001760
001761 ttgattgagc attaactatg tgccaggctt gtcctaagtc ctttgcatgt attcactcaa acaatcctca caacattcct 001840
001841 atcacatctc ccatttcaca gtgagggttc taaagcacgt agtgggtgag gaacttgtcc agggtcacac aactaagtgg 001920
001921 gggtggagaa acatcaaatc taggtggtcc aggtggtggc cagaacccat CAGCACCTCA CTACAGCTGC CTCCAGTTTC 002000
002001 TCGCTCTAGG AAATActctt ccctgtcaac tcctgttgtc ctctgggctc agttgacatg tcatctcctt gaggaggaca 002080
002081 tcctgagatg ctccccgact agggtgggca cccacttcca cactccAAAt gcctatttga cctgtgtatc gctgcatccc 002160
002161 cactgcctgg cagatagcag gcccctaata aatatgattt gagcaaataa atATAGTTCT TCAAAAAATA GGGAGgactt 002240
002241 cttgcttcag gtaatggtag gctaggacat ttggaccaac cctcctgcag aaaatagcca tTTATTTTGA TGCAATATAT 002320
002321 CTGGCTATGA CTAGAGATtt caaatatttg gagggctatt atgtgaagaa ctaaacttac tctttgtgac atagaggtca 002400
002401 gaaattggtc gtttccatag agtatgagag agacagaatt gtgctcatca taagtatctt ttttaaaagt tagacttaat 002480
002481 aaaatgggct gccttggtag gtggtgagtt ctctgtcacg aaagagattc agccacttgc tctgagaaag catggagaat 002560
002561 atcaacattg taagggtcga ccacctcatc tctgaggccc cctccTCACT TAGGTTGCCA Ttgcaggtgg aacactgggc 002640
002641 tgagtgtcaa agaacctggg ttccacaagc tgtgcgacca tggctggttg ttttggatct cattcctaat atctgttagt 002720
002721 taagctgacc cgtcaatact gacccacttc acagagttat gaagggatta aattaggtat tacatgtaaa tctgttttgt 002800
002801 ttgctttttg ttgttctttt ttgttttgct tttttCTTTG CATTATGAAA TCCCAAGTCA ACTTTTTCCA TTCTTTTATT 002880
002881 TTTTTAAAAA TTGACATCAT CATTATAACC ACAAAATAAT TTTTAAAATG GAAAAAAAAA ACTCACCTGC AACCCCACAA 002960
002961 TCTAATACAA TAATCATACT TTTTTCCCTT TATTCTCCTT TATTGTGACC AAGGATGACT TTGGGCATTG CTGTGAGGAA 003040
003041 CTATTTCGTT TAACACCCTA CTACCTGAAC ATGATGCGTA CTCAGCCTTT CACCACCCCC CAAGTAGCTA CACATGATGT 003120
003121 GATAATAGTA TTGGTGGTGG TTTTAGAGAG TTGGAGAGAA AACTGAAGTT GGATTTGGGT AAAAGAAAAA AGAGTGGGAA 003200
003201 TTATTTTTTC TCCATTCTAA AGCCCATAAA GCAATGTTAA TTGTTCCCAC CCCTCTGCTA TTCTGTCTCC TCAGGTACTG 003280
003281 TGTGCAGAAA TGTGATTGAG ATTCAAGTCA GGGCCTCTCT GCCCTTTTCC CTCCAGAAAC AAAACCAAGA TAATTTATCC 003360
003361 TGAACACGGT GAAAAAAGGA AGGGAGGGAG GAGAAAAAGT CCGGGTCTCA CCTGGGATTC TCTGTCTCCT GCAACATGAA 003440
003441 GGATTTAGCC TGGGAGGAGG TGGTGAGAAC TCTGGGAGAG AAAAAAGAAG GAAAGAATAG TTTTACCCAT GCTGAAGTTA 003520
003521 ATTTAAACCT TCACCTAGAG AAGCAAAAAA AAAAAACCCA CACTTTCCCA TTTTGTGCCT CCCTTCCTAG AGTTTTAGCC 003600
003601 AAAGGTTTAG CTAAGTAATT GGTTTTACCA GCGCACTCAC TCCTCCTATC CCAAGTCTGT TTGACTCCCT CCCCATCATC 003680
003681 CTCCTCACCT CTTTTCAGGC AGGGTGGGGA TAGCAGCAGG AGGAGATTTT GGGAGCCTGG CAACTCCTGC AAGGACCGCA 003760
003761 GGACAGCCCC TCTGTGGGGA TGCGTGGTGC CCCATCTGCC GCCCTTCTGA AGAATGCACT GCCTTCACTT TTTACTGTGT 003840
003841 TAGAGTCCAT CCAGACTGTT CTATCCAAAA AAGTTTCTTT TTCCCCCACA GGCAATCAGG AAATGATTCC TTTCCCGACT 003920
003921 GCTTCTGTCT AGTGCCTGGG AATCTTGAGT CAATCCCTCA GTAAGTCAGT GACTAGGGAA ATCCCTCTCT GAGCCTCCCA 004000
004001 GTTCATGTTG CTTAGGGAAC CTGATATTTT CGTGAAACCT GCCTACACAT GGGCAGCCCA ACAGCAGAAC AAATGGTGGT 004080
004081 GACCAAAGTG AACAAAGAAG TATAGTTGTG CCAGCTTCGT AGTTGCCCAT GTGGACAAGT CAGCAGGATC AGGACACGAG 004160
004161 GAAGAGTAAA TGTGAGACAG TCAATGTGAC TTCTGCGATA AACAGATTTT TAAACCCCGA AATTTTGCAA AATTTTGGTG 004240
004241 AAACCTGAAC TTTCTTCGTT GCATATACTG GCACTATCTG TACCATCATA CAACTGTCTC ACATTAAAGC TATTTTTCTT 004320
004321 GGGCACTGAT GAGTAAGGTT GGTATAAGTT CCTCAGATCA ACAAAAACCC ATTTTCCTGT AAGTCTTACA TTTAGTATTT 004400
004401 AAGGAACTAA AACTTAAATA CATTTTGTGA AATGGTTGAC ACTTCACTGA TAATGATTTA TTGCTTGGAT TAATAAATTT 004480
004481 TCCAAAAGTT GTCTTATGTA GAATATGGTT TGCAACCAGC AGAACCATTA ATCTATACTG CAATGATATG CACTATGTAT 004560
004561 AATTGTTTAA AAGCCTCTAC TTAATGATGT AAAATGCTCT ATTTAATTAC ACATTTGGGT AAACTGTATA CTAACATCTG 004640
004641 ATGGCATTTT TCCACTGTTT GTTGCTTTTT TCAAATACTT TATTGTACAA AGCTGTTCTT AATATTTTTC AAGTTTTTTT 004720
004721 CTTTGAATTT TGCTAATGTT TTCCTTGAAT TATGAGCACT GACAGAATGT GCTTAGCACT TTTGGCTATT CACACAGCTT 004800
004801 TTGAGCATGA TTTGCATCCA ATATTTACAT TGCTAGCAAT AATAAGCCAT CTGTGAGTTT TGTCAAAAGT TATTGGGGAT 004880
004881 TTTTTAAATT TTAGAAATGC AAATTATTGT TTCTTTGAAC TAACTCTTAT GCAGTTGCAA AGGCATTTCC AGTTGTTATA 004960
004961 GTTTGTGTAC AATATCAGGT GTTCCAGATT ATGATTCATT ATTAATATCA TTGCTTCCTT GTTCCCTCTG AGGTCCAGAA 005040
005041 GATTCATGTT TACAATATTT AGAAACAATG TTAAAAAGGT ATCCAAAGTT TGTCACTTTA TTATTAGTTT GTTCTTAATA 005120
005121 TTCTGTTTAA GTTTTTGAAT TCATAGATAT CAAAACGCTG CACAATTATG ATTTCCACAG GAATAACAAC ACACTAACAA 005200
005201 TAAGAACCAA AAACAGCAAA TAGGCTGCCT ACAAGTTTTG ACAATATTAG GATAATGATA ATGACAGTTT TTCTAAATCT 005280
005281 CACAGTAAAG AATGCAGCAA CCCAGCAACA CTGctacctg tggcctcagg ctgcagtgtc agctcttccc tgggtctcca 005360
005361 gcctgccagt ctaacctgaa aattatgtac ttgccagccc ccacagtcac gtgagTGAAC TGGCCCAGGC TGGTCACCAG 005440
005441 GGTCAGTTTC TCTGTGTGTC ATTAATTCAT TCAGTCTTCA GCAGTCTCTT TGGAGCTGAG ATGTACCTAC CATCTGCCTT 005520
005521 TTGGGTGCTT AGGGTGGAGA ACCAGAAAAG TATAACCTAG TGTGTATCCT CAAAGAGCTA ACAATATGGG GTGGTACCTA 005600
005601 TAGGTCTGGA AACACTTTAC TGACTCTGTG AGGCATACCA GGAGACGTCA GAGAACAGTC CCTCCTCAAA TGCCAAATGA 005680
005681 GATGCAGAAG AAATAGTTTG CTCAAGTTCA TGGGCCAGAT ATCCCAGTGG TCAGGGAGTT TCATGAATGA GATGGAACTT 005760
005761 TGCATGGAAC CCGAGGGATG TGTATGATTT GAGTAGATGA AGAAAATGAG ACTTTCCAAG CAGCTAGAAG TTAGGGAGCA 005840
005841 GCAAGATGTG TGGTGGGATT GAGCACAGTT GGTTCAGAGG ATAGACTGCA GTTTTAATAA TTTGTAGTAA ATATCTCCCA 005920
005921 ACTGTTTGGC ACTATTGGAG CAAGTTCTTG AATGCCAAAT GAAGGCATAA ATCAGTAAGA GGCATAATAA AAGGCTGAGC 006000
006001 AGTGCTTGGC TTTTTACGAA CTGATCCTGA TAGGAGCAGC TGTTCAACAA AGTTGCCAGG TCACCGTTac atagtccctg 006080
006081 ccttctaggg gctcactgcc tactgggaga gacagTCTGA AAGTTGGTGG AGCATGTAAC TGTTGGATGA GGACTTTGAG 006160
006161 CCTGTGGACT GTGGGACCCC CGAGGAGGGT GTGGCTACTC TAGGCAGAAC AATCCCACAG TTTATTTATA TTTAACCTTG 006240
006241 AAATTCATTA GAGGATTTTT CAGCAGAGGT TTGGTACTTG TTAATGTTAA GGTTTGCATT CTCTAGAACC TCAAGGAAAG 006320
006321 CTGTACCGTG CATAATGTAC CCTCTTATGT TAATGTTGTG TACTGTGATC CTGTTTCAGG GACTTGCACT TAGGAATCTG 006400
006401 TTACAGTGAG CACAGAAGCA GACCTGTGGG CTCATAGTCT TCACCCCCCA CCCATATATA CAAGATGAAC AGAGTGGAGG 006480
006481 TTAAACAACT TGACTAAACA ACACAGTTCA TGGTAAAGCC CAAGACTGTA CCTGCCCATC CACTGCCTTT TCCATGTATC 006560
006561 CTGGAACTGA GCATAGACCT CTTCCCAGGC AGAGCTGACA GCAAGTAAAG GAGATCATAA TCAGGGGACC AAACAACTTT 006640
006641 GTCTAAAGTG TGAATGTCAC CTAAGGAGAA GCTGTGAGAT CAGAAGGGTG GGGCAGAGGA GCAGACACCA TGAGGGAGAG 006720
006721 TCCTTGGGGG TACATCTGCC AGACTGACAC TGTCTGGCCT GGGCAGTGGA GGGGCTAGCA GGAACCACAG GTACTGGTGG 006800
006801 TGTGGCTACT ACCGTTACAA CTGCCTGTGC TTGGACATGG ACCCTCTGCA ATATGCGGCA GTTTCATTCA TTGCCCCCTA 006880
006881 CATTCTACAC CAAGTAGAAA TGGAAGGCAA TTGGATACTT CACAGACAAG ATCTAAGTGG AGAAGGAATG CGTCCTGTGG 006960
006961 CTGCAGAGAT CCTTGGAGCT TGGAGGGGAG AGCTTGAGCC CCACTGATGA TGACCTCCCA CAGCTCGCCA ACTCAGCCCT 007040
007041 CCCTAAGTCC CCATCGGGGG CCAATTCTCA CTCTGGGGTT GGGGGGACTC CACCATAGCT CATCCATCAT AGGGATGTTG 007120
007121 GTATCTACTG TGGGTTGGGT AGGGCCGATG TGCTGAGGAT GGCTCCCCCA CAAGCAAGAG ATGTGGATTT GGGGAGCTTC 007200
007201 CCATCTTgtg ttgaaggaac ataactcaga ataataagag ccaactataa caaacccaca gccaacatca tactgaatgg 007280
007281 gcaaaagctg caggcattcc ccttgaaaag tggcacagga taaggaagcc ctttctcacc actcctattc aatatagtgt 007360
007361 tgaaagtcct gatcacagca gtcaggcaac agaaataata aagggcatcc aaataggaag agaggaagtc aaactatcct 007440
007441 tgtttgcaga cagtatgatt ctatatctag aaaaccccat agcctcagcc caaaaggtcc ttcatctgat aatttcagca 007520
007521 aagtttcagg agacaaaatc agtgtacaaa aatcactaac attcctatac acagtcgcca agccaagagc caaatcagga 007600
007601 gcacaatccc attcataatt gccacaaaaa agaataaaat acccaggaat gcagctaacc aaggaagtaa aggatctcta 007680
007681 caatgagaat cacaaacgct gctcaaagaa atcagagatg acacaaacaa atggaaaaac tttccatgct catggctagg 007760
007761 aagaatcaat atcattaaag tggccatact acccaaagca atttatagat tcaatgctat tcctatcaaa ctatcaatta 007840
007841 catttttcac agaactagaa aaaacttaaa attcatatgg aaccaaaaag cctgagtagt caaggcaatc ctaaacaaaa 007920
007921 agaacaaagg tggaggcatc acattaccta acttcaaact acagggctac catgaccaaa acagcatggt actggtacaa 008000
008001 aagcagacac acagaccagt gggacagaat agagagccca aaaataaggc cacaaaccta cagccatctg atcttcaaca 008080
008081 aagttgacaa aaacaagcaa tggggaaagg tctccctatt caataaatgg tgctgggata actggctggc catatgcaga 008160
008161 agatcgtaac tggacccctt ttactatgta caaaaattaa gatggtttaa agagttaaaa cccaaaatta taaaaatcct 008240
008241 gaagataact taggcaatac cattctggac ataggaactg gcaaatattt catgatgaag acaccaaaag caattgtaac 008320
008321 aaaagcaaaa atggacaaat tggatttaag agctttttca tagcaaaata aacaacaggg cagacaatct accaaatgac 008400
008401 agaaaatttt tgcaaactat gcatctgaca aggggctaat atctagcatc tataaggaat ttaaacacag ttacagg
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Predicted Small Protein

Name NONHSAT118305_smProtein_6836:7006
Length 57
Molecular weight 6344.1756
Aromaticity 0.0892857142857
Instability index 41.1321428571
Isoelectric point 4.80377197266
Runs 7
Runs residual 0.0282982045277
Runs probability 0.0439346909936
Amino acid sequence MDPLQYAAVSFIAPYILHQVEMEGNWILHRQDLSGEGMRPVAAEILGAWRGELEPH
Secondary structure LLHHHHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLLHHHHHHHHHHHHLLLLLL
PRMN -
PiMo -