NONHSAT118797
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118797 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2067 nt |
Genomic location |
chr7+:2443924..2454011 |
Exon number |
2 |
Exons |
2443924..2444081,2452103..2454011 |
Genome context |
|
Sequence |
000001 TCCGGGAACA GTGGGACTTA GACCTCCTCT GCGGGCTCCC GGCCACCGAG ACACCGCCGG CAAAGCCTTG GCTCGGGCAG 000080
000081 AGGCTCCGTC TGGCAGGCAG CACAACAAGC CATAGTGTTT CCAGCATTAT TAAATTATTT AGTTCATAAG CGGGGCTGTT 000160 000161 TGTGTCAGTA GCATAAATAA ATAAACTTGA AACATTCTTG CGCTTCTTAT TGAAGGTCAT GTCACTTGAT TTAGTGCTCA 000240 000241 AGAGCTTGGT TATTTGGACA CGAAGAAGCT ACTTCCCTCA GCAGTAAAGG AAATAGAAAT TTGACTGTCT AGTGAAACCT 000320 000321 ACCAATTCTG CCTAAACATA TACTGTAGAG GCCAGCAGAG CAGAGTGGCA AGGAAGGGGG GCTCTCCAAC AACAGCCTGA 000400 000401 GTTCTGAGGC CAGCTCTAAA CACTGCTAGC TATGTAGACT TGTGCAAGTC TGTAGCTACT TTTCCCAGTT TCATCCCAGT 000480 000481 TCATGTGAGG ATTAAACAAA GTAATATGTG CAAAGCCCTT AGAACATCAC TTTTAACAAC ATGTTAGCTA TTGGTATTGT 000560 000561 TATTTTAAAA TCAATTTGCA AATAGACAGT TTTTTTTTTT TTGACTTGAT AACTGGCTCT TGGTAGAAAG CATGAGTAAT 000640 000641 AATAAAAATA ACACATATTT GTGTAACAAA TATTTGAGCC TGATGAAGAC AGAGAGATAA GTAAGGCCGG GGCAGATTCT 000720 000721 AAAGAAAGTG CTTTACTATT TTATCAACCA CTTAGCTGTG TTTTCTCATT TTTGTGCTCT CGGTAGCTCT GGTTAGCAGA 000800 000801 AAGGCCTAGT TTGTTCTTCT TTTGTAGATG GACTGAAAGT CAGACATAAA ATGACTTGGC CCAGGCCACT CAGCAGAGGC 000880 000881 CGGACTTGGT CTCAGTATCC CTTCCCTCTT CCTCCCAGTC CCTCCGTGTC TGTGCGGAAC TCTGCACTGG TGTTTTCTTC 000960 000961 TGTACTGTGG AAATTGGTGA GAGCTGGGCC ATTGCATTCA TATTAGAGAG AGAAGTGTTA GCCTCTGGAG ATCAGCTTCA 001040 001041 TAAAACCACA AACATTTTCT TTTTAACTTT AAATCAAATG TATTGAGTAT GATTTACATG CAATAAAACG TACCCATTTT 001120 001121 AAGTATGCAG TTTGAGGAAC GTGGCCAAAC ATATTCACCT TGTACCTGCC TCTGCAATCA AACAGTAGAG CATTTCCATC 001200 001201 GCCCCGAGTT TCTGCGTGCT CCTCTGCAGT CTATGATTTT CATCACGATT TTGGCCTCTT TTAAATGTCA TATAAATGGA 001280 001281 ACCACAGAAC ATGCAGTCTT TTACGTCTGG CTCCTTTTTC AGTGTGCGAC CTGTGGCGTT CACCCATGAA TCAGCACTTC 001360 001361 ACCCTTTTTA CACTCACTTG CTGATGTACA TTGGGGTTGT TTTCAGGTTT TAGCTTTTTT TTTTTTTTTT TTTTTTTGAG 001440 001441 ACAGAGTCTC CCTCTGTCGC CCAGGCTGGA GTGCAGTGGC GTGATCTTGG CTCACTGCAA CCTCTGCCTC CTGGGTTCAA 001520 001521 GTGATTCTCC TGCCTCAGCC TCCCGAGTAG CTGGGATCAC AGGCACCCAC CACCACACCC AGCTAATTTT TGTATTTTTA 001600 001601 GTAGAGATGG GGTTTCACCA TGTTGGCCAG GCTGGTCTTG AACTTCTGAC CTCAGGTGAT CCACCCACCT CGGCCTCCCA 001680 001681 AAGTGCTGGG ATTACGGGCA TGAGCCACCA CGCCCGGCCA GTTATCTCAT TTTAATTTGC ATTTCTTTGA TGACTAATGA 001760 001761 TGATGAGCAC TTTCCTATGT GCTTTCTGAC TATTTGTATC TCTTCTTTTG TGAAACGTCT GTTCAAATTT TTTGCTTATT 001840 001841 TTTTAATTGG GTTTATTTTC CGTTGTAAGA GCTCTTTATA TATTCTGGAT ATAGGCACTT TGTTAGATAT ACATATTGAG 001920 001921 AATATTTTCT CCCGGCCTAT GGCCTGTCTT TTACTTTCTT TTTTTATTTT TCTTTTTCTT TTTTTTTCTC TGAGACAGAG 002000 002001 TTTTGGTCTT GTCACCCAGG CTGGAGCGCA ATGGTGTGAT CTTGGCTCAC TGCAACCTCC ACCTCTT |
Predicted Small Protein
Name | NONHSAT118797_smProtein_1124:1348 |
Length | 75 |
Molecular weight | 8579.8702 |
Aromaticity | 0.135135135135 |
Instability index | 54.0582432432 |
Isoelectric point | 6.47918701172 |
Runs | 9 |
Runs residual | 0.0210283454186 |
Runs probability | 0.0449174664861 |
Amino acid sequence | MQFEERGQTYSPCTCLCNQTVEHFHRPEFLRAPLQSMIFITILASFKCHINGTTEHAVFY VWLLFQCATCGVHP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEEEELLHHHHLLLHHHHHHHHHHHHLLLLLLLLLHHHHHH HHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |