NONHSAT118797

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT118797

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

2067 nt

Genomic location

chr7+:2443924..2454011

Exon number

2

Exons

2443924..2444081,2452103..2454011

Genome context

Sequence
000001 TCCGGGAACA GTGGGACTTA GACCTCCTCT GCGGGCTCCC GGCCACCGAG ACACCGCCGG CAAAGCCTTG GCTCGGGCAG 000080
000081 AGGCTCCGTC TGGCAGGCAG CACAACAAGC CATAGTGTTT CCAGCATTAT TAAATTATTT AGTTCATAAG CGGGGCTGTT 000160
000161 TGTGTCAGTA GCATAAATAA ATAAACTTGA AACATTCTTG CGCTTCTTAT TGAAGGTCAT GTCACTTGAT TTAGTGCTCA 000240
000241 AGAGCTTGGT TATTTGGACA CGAAGAAGCT ACTTCCCTCA GCAGTAAAGG AAATAGAAAT TTGACTGTCT AGTGAAACCT 000320
000321 ACCAATTCTG CCTAAACATA TACTGTAGAG GCCAGCAGAG CAGAGTGGCA AGGAAGGGGG GCTCTCCAAC AACAGCCTGA 000400
000401 GTTCTGAGGC CAGCTCTAAA CACTGCTAGC TATGTAGACT TGTGCAAGTC TGTAGCTACT TTTCCCAGTT TCATCCCAGT 000480
000481 TCATGTGAGG ATTAAACAAA GTAATATGTG CAAAGCCCTT AGAACATCAC TTTTAACAAC ATGTTAGCTA TTGGTATTGT 000560
000561 TATTTTAAAA TCAATTTGCA AATAGACAGT TTTTTTTTTT TTGACTTGAT AACTGGCTCT TGGTAGAAAG CATGAGTAAT 000640
000641 AATAAAAATA ACACATATTT GTGTAACAAA TATTTGAGCC TGATGAAGAC AGAGAGATAA GTAAGGCCGG GGCAGATTCT 000720
000721 AAAGAAAGTG CTTTACTATT TTATCAACCA CTTAGCTGTG TTTTCTCATT TTTGTGCTCT CGGTAGCTCT GGTTAGCAGA 000800
000801 AAGGCCTAGT TTGTTCTTCT TTTGTAGATG GACTGAAAGT CAGACATAAA ATGACTTGGC CCAGGCCACT CAGCAGAGGC 000880
000881 CGGACTTGGT CTCAGTATCC CTTCCCTCTT CCTCCCAGTC CCTCCGTGTC TGTGCGGAAC TCTGCACTGG TGTTTTCTTC 000960
000961 TGTACTGTGG AAATTGGTGA GAGCTGGGCC ATTGCATTCA TATTAGAGAG AGAAGTGTTA GCCTCTGGAG ATCAGCTTCA 001040
001041 TAAAACCACA AACATTTTCT TTTTAACTTT AAATCAAATG TATTGAGTAT GATTTACATG CAATAAAACG TACCCATTTT 001120
001121 AAGTATGCAG TTTGAGGAAC GTGGCCAAAC ATATTCACCT TGTACCTGCC TCTGCAATCA AACAGTAGAG CATTTCCATC 001200
001201 GCCCCGAGTT TCTGCGTGCT CCTCTGCAGT CTATGATTTT CATCACGATT TTGGCCTCTT TTAAATGTCA TATAAATGGA 001280
001281 ACCACAGAAC ATGCAGTCTT TTACGTCTGG CTCCTTTTTC AGTGTGCGAC CTGTGGCGTT CACCCATGAA TCAGCACTTC 001360
001361 ACCCTTTTTA CACTCACTTG CTGATGTACA TTGGGGTTGT TTTCAGGTTT TAGCTTTTTT TTTTTTTTTT TTTTTTTGAG 001440
001441 ACAGAGTCTC CCTCTGTCGC CCAGGCTGGA GTGCAGTGGC GTGATCTTGG CTCACTGCAA CCTCTGCCTC CTGGGTTCAA 001520
001521 GTGATTCTCC TGCCTCAGCC TCCCGAGTAG CTGGGATCAC AGGCACCCAC CACCACACCC AGCTAATTTT TGTATTTTTA 001600
001601 GTAGAGATGG GGTTTCACCA TGTTGGCCAG GCTGGTCTTG AACTTCTGAC CTCAGGTGAT CCACCCACCT CGGCCTCCCA 001680
001681 AAGTGCTGGG ATTACGGGCA TGAGCCACCA CGCCCGGCCA GTTATCTCAT TTTAATTTGC ATTTCTTTGA TGACTAATGA 001760
001761 TGATGAGCAC TTTCCTATGT GCTTTCTGAC TATTTGTATC TCTTCTTTTG TGAAACGTCT GTTCAAATTT TTTGCTTATT 001840
001841 TTTTAATTGG GTTTATTTTC CGTTGTAAGA GCTCTTTATA TATTCTGGAT ATAGGCACTT TGTTAGATAT ACATATTGAG 001920
001921 AATATTTTCT CCCGGCCTAT GGCCTGTCTT TTACTTTCTT TTTTTATTTT TCTTTTTCTT TTTTTTTCTC TGAGACAGAG 002000
002001 TTTTGGTCTT GTCACCCAGG CTGGAGCGCA ATGGTGTGAT CTTGGCTCAC TGCAACCTCC ACCTCTT
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Predicted Small Protein

Name NONHSAT118797_smProtein_1124:1348
Length 75
Molecular weight 8579.8702
Aromaticity 0.135135135135
Instability index 54.0582432432
Isoelectric point 6.47918701172
Runs 9
Runs residual 0.0210283454186
Runs probability 0.0449174664861
Amino acid sequence MQFEERGQTYSPCTCLCNQTVEHFHRPEFLRAPLQSMIFITILASFKCHINGTTEHAVFY
VWLLFQCATCGVHP
Secondary structure LLLLLLLLLLLLLLLLLLLLEEEELLHHHHLLLHHHHHHHHHHHHLLLLLLLLLHHHHHH
HHHHHHHHHLLLLL
PRMN -
PiMo -