NONHSAT118885
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118885 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1595 nt |
Genomic location |
chr7-:4936899..4938466 |
Exon number |
1 |
Exons |
4936899..4938466 |
Genome context |
|
Sequence |
000001 ACTGTAGCCT CTGCCTCCTG GGTTCAGGCA GTTGTCCTGT CTCGGCCTCC CAAGTAGCTG GGATTGCAGA TGCGTACCAT 000080
000081 GGAGCCCAGC TGGTTTTTGT ATTTTTGGTG GAGACAGGGT TTCGCCGTGT TGGCCAGCTG GTCTTGAGCT CCTGACCTCA 000160 000161 GGTGATCTGC CCACCTTGGC CACCTCCTGA AGTGCTGCAA TTGCAGGCGG GAGCCACTGC GCCCTGCCCA AACGCCTCAT 000240 000241 TTCTTAATAC CATCACCTTG GAGTTAGGTT TTCAACGTAG AATTTGGAGG GACACAAATC CCAGCACCAT CCAATCTTAT 000320 000321 CCTATCCTAT CCTTCCCTAC CCTATCCTAT CCCATCCCAT CTTATGTCAT TGTTTCAAAT TACTGGTTGC AACCCACCAA 000400 000401 ATGATGTTAT GACCCATGAG TGCGTCTAAA TCCTAAGTTC TGAAAGCTGT TCTTAGTGGT ACATTCCCAG AAAGCCATAG 000480 000481 TTGTTGGTAA TCAGTGCTTA GTGTGTATTT GCTGCAATTG GCAGGGCTCA GCATGGTGTC ATATCTTGGG ATCCAGAGTG 000560 000561 CCCCCAGGCC TTGTGGGGAC AGGTAAGGAG AAAGAAATTA GGAGCTTCCA AGAATCTGGT TACCCAGAAC CCTGACCCCA 000640 000641 CTAGGAGGAA TACAGGATCA CATTTTATGG CCTCTTGTCT TTGTGATGGC CCATGTTCGT GGGGGACCTT GAGGCTAGGT 000720 000721 GGTCCTAGAG ACCCAGTGGG CAGCGTGGCC CTGAACTTAA GCCAGCATTA GGTCAGGAGC GTTTAGAAGG CAAGAGAAAG 000800 000801 AGATAGGCCG GGTGCGGTGG CTCACACCTG TAATCCCAGC ACTTTGGGAG GCCAAGGTGG GTGGATCACT TGAGGCCAGG 000880 000881 AGTTTGAGAC CAGCCTGGCC AACATGGTGA AACACCATCT CTACTAAAAA TACAAAAATT AGCCAGGCAT GGTGGTGGGC 000960 000961 ACCTGTAATC CCAGCTACTT GGGAGGCTGA GGCAGGAGAA TCTCTTGAAC CCGGGAGGCA GAGGTTTCAG TGAGCCGAGA 001040 001041 TCACACCATT GTACTCCAGC CTGGGTGATA GAGTGAGACT CTGTCTCAAA AAAAGAAAGA AAGAAAGAAA GAGATTAAAT 001120 001121 ACACTGGAGA AAGGAAGGAG GGCACCCAGT GTTGGAAGGG CTAATCTGCC TCCATCAGCA TTTTCAAATT TCAGGCTCTG 001200 001201 GCCTTTCACC GAATGCACTT CCCACCAGTC CTGTTTACAC TGCCAGGTTC CGCTAGGAGC TTTCCCACCT CTGCAGGTGC 001280 001281 AGGCCTCGCT GCTTCTTAAG GCCTTTCTCT GGGGTGGGAG GAAACGGAAA CTGTATGATT GTCTTTCATA TTCACTTTTA 001360 001361 TAGACCTATA ATGTCTACAA TGTCTGAGAG TGGCGTTTGC GGCATGACTT TTAAAAAAAT GTCCTGCTGG TATTGGACCC 001440 001441 TTTCTGTGTT TGTGAAATTG CTATTTTGTA TTAACACAGT ATTTGATAAA CATTTATATT AAGAAGAATA ATCCCTCTGC 001520 001521 TGAATATTAT TGTTTCCAAT GGAGTAGAAA GAACTTAAAA AAAAAAATCA AGATGTCACA AAAAAAAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT118885_smProtein_1334:1501 |
Length | 56 |
Molecular weight | 6618.9387 |
Aromaticity | 0.2 |
Instability index | 61.5656363636 |
Isoelectric point | 8.95904541016 |
Runs | 10 |
Runs residual | 0.030303030303 |
Runs probability | 0.0235294117647 |
Amino acid sequence | MIVFHIHFYRPIMSTMSESGVCGMTFKKMSCWYWTLSVFVKLLFCINTVFDKHLY |
Secondary structure | LEEEEEELLLLLLLLLLLLLEEEEEEEEEEEEEEEHHHHHHLLEEELLEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiii |