NONHSAT118917
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118917 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2937 nt |
Genomic location |
chr7-:5467807..5476343 |
Exon number |
4 |
Exons |
5467807..5468558,5468717..5469269,5471212..5472165,5475665..5476343 |
Genome context |
|
Sequence |
000001 CCTTTTTCTT TTTCTTTTTT TTTAAAGATA ATGTCTTGCT CTGTCACCTA GGCTGGAGTG CAGTGGCATG ATCATGGCTC 000080
000081 ACTGCAGCCT CGAACTCTGG GCACAAGAGA GCCTCCTGAG TAGCTAGGAC TACAGGAGTG CACCACCATA CCTGGCTAAT 000160 000161 TTTTTTTTTG TATAGATGGG ATCTTGCTAT GTTGCCCAGG CTGATCTCAA ATTCCTGGGC TGAAAGGATC CCTCTGCCTT 000240 000241 GGCCTGGCAA AGCGCTGGGA TTACAGGCAT GAACCACTGT GCCCAGATGA CCCCATCTTT CAATAGGAGG AACTTTTTAG 000320 000321 GGCTGTGTTC TCATGCCACC ACAACCCAGG GGGCCAGATT AGCTGAGGAC GTGTCCTCTA AGCCCTTCTG TGTCCCTTCT 000400 000401 GTTTTCAGTT TCTCTTCTCT ATGAGTATCT CTGTCTCCTT TCCTTGGAGG TGACAGAGGG CACCCATGTG CCCAGGCTCA 000480 000481 CCCAGGCAGT GGGTGACACC AGTGGGTGAC AATGTGGATG GCCCGCCATG CCAGACACTC ACTCCAATGC CCATTTTACA 000560 000561 GATGAGAAGA CTGAGTACTG AGTGGCCAGG TAGACTGAGC AGGATCGCAG AGGGAGGATT TGTTCCGGGC CAATCCCCTT 000640 000641 GTTTCCCATC CATGTTCCCT ATCCTTGGCA ACTTGGGGGG GGTTAGGAAT CAAATACATG AATTTGGGGG GGACTTTCTT 000720 000721 CAATCTACAA CAGAGGAGGA TCTGCGGGAA TGGGGCCAGG TGAGGAAGGC AGGGGCAGGG GCAGGTGGGG GACAACCGGA 000800 000801 CCCCTCCAGC AGATGGAACC AAGTGAACAG GTCTTTCTGG CAGGAGCAGC TCTAGAAGAT TCTTGTTTTG TTTTTTTGGA 000880 000881 ATGGAGTCTC GCTCTGTTGC CCAGGCTGTA GTGCAATGGC ATGATCTTGC CTCACTGCAG CCTCCGCCTC TCGAGTTCAA 000960 000961 GCAATTCTCC TGCCTCAGCC TCCTGAGTAG CTGGGACTAC AGGCACCCGC CACCAAGCCC AGCTAATTCT TGTATTTTTA 001040 001041 GTAGAGACGT GGGTTTCATC ATGTTGGCCA GGCTGGTCTC AAACTCCCGA CCTCAGGTGA TCCGCCCGCC TCGGCCTCCC 001120 001121 AAAATGCTGG GATTACAGGT GTGAGCCACT GCGCCTGGCT TAGAAGGTTC TTTAGAGAGT CTCCATGGCC ATAGAAGCTG 001200 001201 GTGTGTGAGT GCCTGTGTGT GTGTGAGTGC CTGTGTGTGT GCCTGTGTGT GTGTGCCTGT ATGTGTGTGT GCCTGTATGT 001280 001281 GTGTGTGCAT CTGTGTGTGT GCCTGTATGT GTGTGTGCCT CTGTGTGTGT GTGTGTGTGT GTGTATGATA GGATTCCTAC 001360 001361 CTCGTGCTCC TCTCTGGGGT GAAGGCAGAC CAATACATGA AGAGAGAGTG GAGGGCAGCC GGGAGGGGGC CTGTCAGGCT 001440 001441 TGATCTTTGT GGGTTTGTTT TTGACTTGAC GCTGGCTCTA GAAATGGATT GACATTGGGG TGGGCGTGGG ATGGAGGCTG 001520 001521 ATAGGAGAGG GAAGCTTTCA AAGCTGTAGC CATGGGAAAT GTTTTTATTT TCTGCTTGAA AGAAAATGCC AAAGAAGGAT 001600 001601 AAAAAGGAAA AAAAGGTGGG GGGAGGTGAC TCGCTCTTCA GCAGGCGCCC CCGGGAGCTG ATTTATTGGC GGTTTATTTG 001680 001681 GAGAAACGCT ATCGCTCTTA GATTCTGGAG GGGGGAAAAA ACACGCTCGC GGTGGACTTT AACCTTGGGC TGAAACCACA 001760 001761 GCGCTTTGTT TTCGGAGGTG CTTCCTGGGG CGCCGCGGCA GGGCTGGGGC CTAGCGGGGG AAGCTGGGCC GGAATGTGGC 001840 001841 CCAGCAGCCT CTCCACTCCC AGGCTGCGCT TCTGCCTGCC CGGGCAAGCG CTCAAATTCC TCTGGGCCCG GCCGGAAGCC 001920 001921 CTCGGTCCCT CCAAAAGTGC TTCTAGAAAT TCTAGGAAGG AGCCGAAGCT CCTTGGCTGA GGGCGTCCTT GGAGCGAGGT 002000 002001 TTCCAAACCC TCCCATCCCA AGCCCCCGGC ATGTGCCACC CGCCGTTTGC AGTCGTGTCA CTGGCATGGT GAGGTTTTCG 002080 002081 GGAGGCATCC ATGAAGGGCT GAATGCTCCG GTTTCCGTGC ACCTTAAGTC TGGAGCAAAA CCCCGCTGGA GGTGGTTGGC 002160 002161 TCCAATCGCG CCCATGGTTT GCTTGATTCC CGCTTTCCCC ATTGCTGAGC CAAAGCTCGC ACCAAGGAGG GCTCCAAGCC 002240 002241 GGGACCCCGG TTGGAGAAAA TCCTGGGGCA TCCAGCGGCA CGGAGGGTGG GAACCAGATG AGCCTCCGCC TCCGCGCACG 002320 002321 GTGCCCACAG TCACACCCCC CGTTGGTCCA CCTGTGCCAA AAAAAAAAAA AAAAAAAAAA AAAAAGGCCC TTCATGCGCC 002400 002401 CGCAGAGGGC TCTGAGGAGG CACGAGATGA AGGCAGGGTC CGCGGAGAGG TGGCAAGCTG AATTCTGAGA AGCCGCTCTG 002480 002481 ACCCTGACCC TGGGGTCACC CCTCCGTGGT GCAGGTGGCA CCGGAGTTGG GCTCGAGCGG AGAGCCGCAT GCCCATCCCA 002560 002561 GTCTCACCGA GCCTTCCTAG GAGGAAATGC CAGGCCCGGG CGCCCCTACC CCAAGGCGGT GATCCTGTGA AGCTCGGGCC 002640 002641 ACCTCAGGGT CCAGCGCCCT CAGAGATGGA TGGTGTTGAC ACCGAGGAAC GAGGCCGTTC CCTCTCTTTG GTGAACGGAG 002720 002721 AAGCTCCTGG CGTGGTTCCC TGCGCAGTCT CCGGGTCCCC AGGCCGTGAT GGGGTGAGCA GGGTGCGCGG CGTGGCCCGG 002800 002801 GACACGAGAC CGGCCCGGAG CACCCCGGCG TGAGCAGCGG GAAGGAGGGC CCGCCCGGAG ATTTATGGCC GCAGCCGGCC 002880 002881 CCCTGTGCAC TGAGCGCGTC TCGGTCCTTT CCCAGCCAAA CAGTGGAGTG GAGGACC |
Predicted Small Protein
Name | NONHSAT118917_smProtein_2297:2467 |
Length | 57 |
Molecular weight | 6793.113 |
Aromaticity | 0.0535714285714 |
Instability index | 86.4178571429 |
Isoelectric point | 11.7346801758 |
Runs | 9 |
Runs residual | 0.00741608118657 |
Runs probability | 0.0472433217532 |
Amino acid sequence | MSLRLRARCPQSHPPLVHLCQKKKKKKKKRPFMRPQRALRRHEMKAGSAERWQAEF |
Secondary structure | LLLEELLLLLLLLLLHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHLLLHHHHHHLL |
PRMN | - |
PiMo | - |