NONHSAT118940
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118940 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1642 nt |
Genomic location |
chr7+:5862791..5887232 |
Exon number |
6 |
Exons |
5862791..5863157,5870812..5870914,5873158..5873199,5879580..5879706,5880321..5880487,5886397..5887232 |
Genome context |
|
Sequence |
000001 TGCTTTTACG CAGTGTTTTG AGGTGCAGGA CTGCAATGCC CGCACTTCCG GACCCCAGAC TCTTCCTACG GCGACTGACA 000080
000081 CCTCAGACAC GCGTTGTGGG GGGCGGCGCT CTGGCTCCGG GGCTGTGCCC AGCGCGAGCG TGGCCGGCAC CCACTTGCTG 000160 000161 CAGAGCCGGC ACTGCACTGG GGTTCTTGGG GGCGGCTCCT CCAGACGTCT CTGCGGGTTG TCGGGTGCTG CCGAGTTGGG 000240 000241 TTGGGGGACG CTACAGGTAG TGGGTCCGGA GCAGCGGCTG GCCCCTCATC TCACTGCCCT TCCTCGGACC CCACCGTCCT 000320 000321 CTGGAAGCTT GTGCAGGGCA CCTGCCACTG TGACCACCTG GACGCAGTGG GTTGTTTTTT CCGTTTCCAT CTCTGGCTAG 000400 000401 TCTTGAAGGC TAGACTTGCG TAGGAGAGCA GACACGAGGA CATGAGCCAG TTCTGCTGAG CTGTTACTGT ATACCTGCTT 000480 000481 TCCCACAACA GCAAGGAAGA ACCATGGCCC AGGGGTCACT GTCATTCGGG GACGTGGCTG TGGGCTTCAC CCGGAAAGAG 000560 000561 TGGCAGCAGC TGGACCTGGA GCAGAGGACC CTGTACCAGG ATGTGATGCT GGAGAACTAC AGCCACCTGC TCTCTGTGGG 000640 000641 CTGAACTGTC TGCTTGCTTG GAAGGCCCAG CTGGCTCAGC ACAAATCCTT TAACCGTTTC TCCCCAAGAG GGTGTCAAGT 000720 000721 CAGCAAACCA GCTGTGATCT CCAGTTTGGA GCAGGGGAAG GAGCCATGGA TGGAGGAGGA AGAGATAAGG ACGTGGAGCT 000800 000801 TCCCAGAAGA AGTTTGGCAA GTTGCTACCC AGCCAGATAG CCAACAGCAA CACGAAGACC AACATTTGAG CCATACGTTT 000880 000881 CTAGACAAGA AAGACTGGAC CGGAAATGAG CTTCATGAAT GTAACGAACT TGGAAAAAAA CTCCATCAGA ACCCAAACCT 000960 000961 CCTTCCATCA AAACAGCAGG TCCGCACACG TGACTTGTGC AGAAAGAGTT TGATGTGTAA CCTGGACTTC ACTCCTAACG 001040 001041 CCTACCTGGC GAGGAGGAGA TTTCAGTGCG ACGGCCACGG AAACTTCTTC TCTGTTCGAA ACTTGAAACT CCACCTTCAG 001120 001121 GAGCGAATCC ACGCGGAGGT CACCAGTGTG GAAGTGCTTT AAGCTGTGAC GAGGGAGTTC CTGCAGCTCA GGGAGCCAGT 001200 001201 AGTGAGAAAC CCCACGAATG CACGAAGTGT GGGAAAGCCT TGTGCTGCAG ATCGGACCTC AGGGTACATC ACGGGGTCCA 001280 001281 CGCGGGGGAG AAGTCCTCTG CGTGCAGTGA ACGGGGGAGT GGTTTCAGGG AGAAGCTTTG CCCTGACAAA CAGGGAACTC 001360 001361 ACACAAAGGA GAAACCCGCT AGAGACAGCA GAAGTGGTAA AACGATCTTC CGGAAGACAC GCCTGTGTGT CCCGGGCACA 001440 001441 GTTCACGCCG GAGCGAAGCC TTACAAGTGT TGGGAGTGTG AGAAAACCTC CCACAAGTCG CGCCTCATCG AGCACCTTCG 001520 001521 CTCCCACACG GGGGAGAAGC CCTGCGGCTG CAGGGAATGC GGAAAGGCCT TTTTCCAGAA GTCACACCTC ATCCTGCGTC 001600 001601 AGAGGACTCA CACGGGGGAG AAGCCCTGCG ACTGCGCGGA GT |
Predicted Small Protein
Name | NONHSAT118940_smProtein_35:259 |
Length | 75 |
Molecular weight | 7668.9795 |
Aromaticity | 0.0675675675676 |
Instability index | 49.1364864865 |
Isoelectric point | 11.1419067383 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0459122223828 |
Amino acid sequence | MPALPDPRLFLRRLTPQTRVVGGGALAPGLCPARAWPAPTCCRAGTALGFLGAAPPDVSA GCRVLPSWVGGRYR |
Secondary structure | LLLLLLHHHHHHHLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLL LLEEELLLLLLEEL |
PRMN | - |
PiMo | - |