NONHSAT119146
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119146 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3942 nt |
Genomic location |
chr7+:8109705..8128707 |
Exon number |
2 |
Exons |
8109705..8110761,8125823..8128707 |
Genome context |
|
Sequence |
000001 GTCCACTGCA GCAGAATCTC TGATGCCACT TAATTAGCTG TGCCActgaa ctataggttc ctcatttgtg aaaacaaaac 000080
000081 aatggaccag tgagctctga ggtaccctca agaccaaaat atgtggctct atgatGATGG TTTCCTTTTT TTCCTTCTTT 000160 000161 TTGCTACTGA GAACAAAGTA TTCAAACTAA GGAAGATTAT GAGTAGTCCT ACTTAGTTGG ATACTGAGTT AGTAGAATTT 000240 000241 GATATCCAAA TTCTTCTAAT ATTAGAATTC TTTTGAGTTA CATTAATAAA CTCTATTGAG TACTAATAGA ATAAACCTCT 000320 000321 TTATTAGAAA TTTTGGATAA TTTGCAAAGG AAATAGAAAC TATGGTTCTG TTCATAACCT CTAAAAATTA AACTAGGAAG 000400 000401 GAATGAACAA ACAGAAAAAT CTGTACCTGT GAATATGAGG AATATGAGAT TTCACTTTTT CTTACAAGCA AGTCAAAGTG 000480 000481 ATTTTTTTTT TAGCTTTGtt aattctttca gcaaatgttt actgaatatc tgccatgtgc caggagtagt gccaggcaca 000560 000561 ggACTCCCGC TGTCCTTGAA GAGTTTTGTG GGATGTGCTG ACCTACAGGT ACATACAGTG AGCTATGGAA TTTTTAAGGC 000640 000641 AAACAATTTG ATTTAAAAGA AATGTTTAGT TCAATAAAGG TAACATACGC AGAAATTAGC TTAAGACACA AGCTTGGTCT 000720 000721 TTAGCCTTTG AAGAATAAAC TGGGTCAGTA GTGGTGGAAT ATGAAATCAA GGGAAATACT ATGTGCTTTC TATGTAGATG 000800 000801 AATATATGCA CCAGCATTTG GATGTTTAAT GGTATTCCTC TTACAGCCGT TGGACATACC AGATGGTCGA AGAGCTCCAC 000880 000881 TTCCTGCTCA TTACCGGAGC AGTAGTACTC GCAGCATTGA CACTCAGACT CCTTCTGTCC AGGAGCGCAG CAGTAGCTGC 000960 000961 AGCAGTCATT CACCCTGTGT CTCCCCTTTT TGTCCCCCGG AATCCCAGGA TGGTAGCCCT TGCTCAACAG AAGATTTGCT 001040 001041 CTATGATCGT GATAAAGGTC TCGTCAGCCT ATCTCGGCCC CTCTCTTTTC ATGTCCTGAC AAAAACAAGG TTAATTTCAT 001120 001121 CCCAACCGGA TCAGCTTTCT GTCCTGTAAA ACTTCTAGGC CCCCTCTTAC CTGCTTCTGA CCTTATGCTC AAGAACTCCC 001200 001201 CTAACTCTGG CCAGAGCTCA GCTTTGGCAA CTCTGACCGT TGAGCAGCTC TCATCCCGGG TTTCCTTTAC GTCTCTTTCT 001280 001281 GATGACACCA GCACAGCGGG CTCCATGGAG GCCTCTGTCC AGCAGCCATC CCAGCAGCAG CAGCTCCTGC AGGAACTGCA 001360 001361 GGGTGAGGAC CACATCTCTG CTCAGAACTA TGTGATCATC TAAAAAAGGG GGAGCTGGCC TCCACCCTAT GTTCCATGGA 001440 001441 TTCGGAACAA GATTTCAGAC ATCTGCATGA GTGACAAACT TTCTGAACAC CACCACCACC AATAATACTT ATCAGCATCA 001520 001521 TAAAGTATCT CTTAAACACT GATCTTGGCA GGGACGGAAC TCCTATTCAG CAGTTTTTGT GGAAAGCAGT AATGCTTGCA 001600 001601 AAACGTGTGT GTCATTCAGC ATTTTAAGTG GAGACTATGC ATTTCATAGT ATATTTGACA GATTAGTACT GTGTCCTGTG 001680 001681 TTTTGTTCCA GATTCTTCAG TATAAATAAG CTCTATATCA AAAAGTTGCC TGTCTAAATA GAAAATGTCT TGCTGTGTTT 001760 001761 TGTCCTATGG AAAATACTGT AATTCAGGAT TATGTTTACA ATTGATCCAG GTGTTTGTTT CTAACTTCTG TAATACATAC 001840 001841 AATGCAAAAA AAAAAAAAAA AAAATGGCCA CAACAGTTGC ACAGTGCCCA CCCTATGGCC TAGCTTCAGG TACTTCAGTT 001920 001921 GAAGTCTAAA CTCAGGTAAC TTGGAATGTA TATCATATTG GGATATTAAA TATTTCACAG CTAAAAAGCT AAAGAGGGAA 002000 002001 CATCACTCTT TTGCCTTTCC TTATTTTATG CATTTCCCTT TCCTCATTAC ATTCCACATT CTTAGAATAA GAAGTGCATT 002080 002081 CAATCCTAGG AGAATGATAA TCCTGGACAT GGGTGAACAT GAGGAGAACC AGCAAAATCT GTGGTGTTTG ACATCACTTT 002160 002161 GTCATGTGGT TACAAGTAAA ACAACTGTTG CATTCACTGT TTCAACATGT GTACATGTGG CTTTTTTAAA AGTTCAGGTG 002240 002241 TTGCTCAGTA AAGGACTGTG ACAATGTTGC AAATAAAGTG TTCAGTACTG GACTGTACAT AAACATTCCA CATTGTGTGT 002320 002321 GATGAAATTT AAAGACAAGA ATGTCTAGAG TTAATTTCAA AATAAGTGAA GTGTTTGACG GAATGGTTGA GATTTTTTTG 002400 002401 TTTATGTTAG CCATCAGGGT CATAACTGTT ACCATTTTAT CTAAAGACAT ATTTATATTT AGTTTCTCCC TTGGAAATTC 002480 002481 TTTATTTTGC AGGTGAAAAA GTGACATACT TTTTGTTATT GTCTTCCTCA AGCAGTTTAG GTGCATGATC TTCATTTACA 002560 002561 TAGAATACTT GGGTCTCAGA ATTGATGCAA CATAAGCAGG TTTTTTTGGT GACTTACAAG AGCAATAGTT TGAAGCTATC 002640 002641 TCATTTAAGC CTCTCATAAT GCATAATCAT GAGTAGTTTT GAAATTTGCA ACCTGTGAGG TAGAGCATAA ACTCAAGAAA 002720 002721 ATAGCCTTGA ACTTGCAGAC TTTTGACACA AGTTCTCCAC AAAGTGTGAA GAGAGCCCCA GGCATTCCTG ATTGGTCAAT 002800 002801 GGGAGAGCCT AACTTTCATT GTTTTCTTCA GTACAAAGAG TATCCAAAAG CTAAGTTTTT GTATTCCACT ACTTTCAGTT 002880 002881 CAATAAAACC TAGAGTTGTT TCATCTGCGC CTAAAGTGTA TGGCACAATT TTCTTAAGAA TTAGGGGAAC CAGGTGCCTA 002960 002961 CAGTTAAAGG AACGTTTCAG TTCCTTTCAT TCATTCCTGG GTTTTTCTTT TATTTTCTAA GAAGGTTGAA GAAGGATGAG 003040 003041 TGATAGAGAA GAAAGCAACA CCATTGATTT TTTTTTTTAA GAAATGATAT ATATAtgtat atgtttgtgt gtgtgtgtgt 003120 003121 gtgtgtgtgt gtgtgtATTC TGTGCATTAT TTTGTCATGA TCTCAATTCT CTTCTTTCCA CCAAAGTTTG TCGTAATATT 003200 003201 TTCTCCTGAA GGTGCATTCT GGCTCCTTTA AATTAGTCAG TGTTATATTG TAGGAGACTG TCATGGAAAA AAGGACTCAG 003280 003281 TTTACTTTCG TCATTTTCAC AGGGGAACCT TTTAAAACAA TCTTTTCAGC AGCAGATACC TTTAACCCTA ATAATCTCAG 003360 003361 GCCTTGATGA AAATACTATA TTTTGTAGAT TATGGTTAAA GGGGGAAAAT TACTAGTTCC GTAAGATAAA TATGAGCTCC 003440 003441 ATTTGACTTC TGATGTCTGG TTTAGCATTA CATAATATGT TGATCTTACA CTCTGCTTTT GTCCAAATAA AATGCAATAG 003520 003521 TATCAATATC AATTTCAGAA AAATGGACTG AATATGCTTT TTTGGTGATG AAATCTCATG TACGATATTT ATAGTGATGT 003600 003601 GCTTTTATTT TCTCATGAGA TACTAAATAT TAATTGTGTT GTACATTTGT TCTTAGCATA TATTAAAGTT TTGAACCAAA 003680 003681 TGTGTTAAAG CTTACGCTTT GCCATGTAAA TTTCCCAGAA GTTGTTGAGC TCAAATGTAT CCTACATCCA GCTGTAGAAA 003760 003761 TTTGTCAGAA ATTGTTTAAA TTTTGTATAT AATTGTACTG TTTAATTCTA GCCATTGCGC TGAACAGTAT TTGAGTTACC 003840 003841 ATATAATATG GCTTTACACA AGGAAATGTG TGGCTTTTGT TTTGTATTTT TTCAGTATAG AAGTTCCTGT GTCTTATTTA 003920 003921 AATAAAGTTA TTAGTAAAAC TG |
Predicted Small Protein
Name | NONHSAT119146_smProtein_2027:2260 |
Length | 78 |
Molecular weight | 8869.4582 |
Aromaticity | 0.0909090909091 |
Instability index | 54.8090909091 |
Isoelectric point | 9.09967041016 |
Runs | 13 |
Runs residual | 0.0327498588368 |
Runs probability | 0.0547062900004 |
Amino acid sequence | MHFPFLITFHILRIRSAFNPRRMIILDMGEHEENQQNLWCLTSLCHVVTSKTTVAFTVST CVHVAFLKVQVLLSKGL |
Secondary structure | LLLLEEEEEELEEELLLLLLLEEEEELLLLLLLLHHHHHHHHHLEEEEELLEEEEEEEEE EEEEEEEEEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHHHLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTT TTTTTTTiiiiiiiiii |