NONHSAT119146

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT119146

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3942 nt

Genomic location

chr7+:8109705..8128707

Exon number

2

Exons

8109705..8110761,8125823..8128707

Genome context

Sequence
000001 GTCCACTGCA GCAGAATCTC TGATGCCACT TAATTAGCTG TGCCActgaa ctataggttc ctcatttgtg aaaacaaaac 000080
000081 aatggaccag tgagctctga ggtaccctca agaccaaaat atgtggctct atgatGATGG TTTCCTTTTT TTCCTTCTTT 000160
000161 TTGCTACTGA GAACAAAGTA TTCAAACTAA GGAAGATTAT GAGTAGTCCT ACTTAGTTGG ATACTGAGTT AGTAGAATTT 000240
000241 GATATCCAAA TTCTTCTAAT ATTAGAATTC TTTTGAGTTA CATTAATAAA CTCTATTGAG TACTAATAGA ATAAACCTCT 000320
000321 TTATTAGAAA TTTTGGATAA TTTGCAAAGG AAATAGAAAC TATGGTTCTG TTCATAACCT CTAAAAATTA AACTAGGAAG 000400
000401 GAATGAACAA ACAGAAAAAT CTGTACCTGT GAATATGAGG AATATGAGAT TTCACTTTTT CTTACAAGCA AGTCAAAGTG 000480
000481 ATTTTTTTTT TAGCTTTGtt aattctttca gcaaatgttt actgaatatc tgccatgtgc caggagtagt gccaggcaca 000560
000561 ggACTCCCGC TGTCCTTGAA GAGTTTTGTG GGATGTGCTG ACCTACAGGT ACATACAGTG AGCTATGGAA TTTTTAAGGC 000640
000641 AAACAATTTG ATTTAAAAGA AATGTTTAGT TCAATAAAGG TAACATACGC AGAAATTAGC TTAAGACACA AGCTTGGTCT 000720
000721 TTAGCCTTTG AAGAATAAAC TGGGTCAGTA GTGGTGGAAT ATGAAATCAA GGGAAATACT ATGTGCTTTC TATGTAGATG 000800
000801 AATATATGCA CCAGCATTTG GATGTTTAAT GGTATTCCTC TTACAGCCGT TGGACATACC AGATGGTCGA AGAGCTCCAC 000880
000881 TTCCTGCTCA TTACCGGAGC AGTAGTACTC GCAGCATTGA CACTCAGACT CCTTCTGTCC AGGAGCGCAG CAGTAGCTGC 000960
000961 AGCAGTCATT CACCCTGTGT CTCCCCTTTT TGTCCCCCGG AATCCCAGGA TGGTAGCCCT TGCTCAACAG AAGATTTGCT 001040
001041 CTATGATCGT GATAAAGGTC TCGTCAGCCT ATCTCGGCCC CTCTCTTTTC ATGTCCTGAC AAAAACAAGG TTAATTTCAT 001120
001121 CCCAACCGGA TCAGCTTTCT GTCCTGTAAA ACTTCTAGGC CCCCTCTTAC CTGCTTCTGA CCTTATGCTC AAGAACTCCC 001200
001201 CTAACTCTGG CCAGAGCTCA GCTTTGGCAA CTCTGACCGT TGAGCAGCTC TCATCCCGGG TTTCCTTTAC GTCTCTTTCT 001280
001281 GATGACACCA GCACAGCGGG CTCCATGGAG GCCTCTGTCC AGCAGCCATC CCAGCAGCAG CAGCTCCTGC AGGAACTGCA 001360
001361 GGGTGAGGAC CACATCTCTG CTCAGAACTA TGTGATCATC TAAAAAAGGG GGAGCTGGCC TCCACCCTAT GTTCCATGGA 001440
001441 TTCGGAACAA GATTTCAGAC ATCTGCATGA GTGACAAACT TTCTGAACAC CACCACCACC AATAATACTT ATCAGCATCA 001520
001521 TAAAGTATCT CTTAAACACT GATCTTGGCA GGGACGGAAC TCCTATTCAG CAGTTTTTGT GGAAAGCAGT AATGCTTGCA 001600
001601 AAACGTGTGT GTCATTCAGC ATTTTAAGTG GAGACTATGC ATTTCATAGT ATATTTGACA GATTAGTACT GTGTCCTGTG 001680
001681 TTTTGTTCCA GATTCTTCAG TATAAATAAG CTCTATATCA AAAAGTTGCC TGTCTAAATA GAAAATGTCT TGCTGTGTTT 001760
001761 TGTCCTATGG AAAATACTGT AATTCAGGAT TATGTTTACA ATTGATCCAG GTGTTTGTTT CTAACTTCTG TAATACATAC 001840
001841 AATGCAAAAA AAAAAAAAAA AAAATGGCCA CAACAGTTGC ACAGTGCCCA CCCTATGGCC TAGCTTCAGG TACTTCAGTT 001920
001921 GAAGTCTAAA CTCAGGTAAC TTGGAATGTA TATCATATTG GGATATTAAA TATTTCACAG CTAAAAAGCT AAAGAGGGAA 002000
002001 CATCACTCTT TTGCCTTTCC TTATTTTATG CATTTCCCTT TCCTCATTAC ATTCCACATT CTTAGAATAA GAAGTGCATT 002080
002081 CAATCCTAGG AGAATGATAA TCCTGGACAT GGGTGAACAT GAGGAGAACC AGCAAAATCT GTGGTGTTTG ACATCACTTT 002160
002161 GTCATGTGGT TACAAGTAAA ACAACTGTTG CATTCACTGT TTCAACATGT GTACATGTGG CTTTTTTAAA AGTTCAGGTG 002240
002241 TTGCTCAGTA AAGGACTGTG ACAATGTTGC AAATAAAGTG TTCAGTACTG GACTGTACAT AAACATTCCA CATTGTGTGT 002320
002321 GATGAAATTT AAAGACAAGA ATGTCTAGAG TTAATTTCAA AATAAGTGAA GTGTTTGACG GAATGGTTGA GATTTTTTTG 002400
002401 TTTATGTTAG CCATCAGGGT CATAACTGTT ACCATTTTAT CTAAAGACAT ATTTATATTT AGTTTCTCCC TTGGAAATTC 002480
002481 TTTATTTTGC AGGTGAAAAA GTGACATACT TTTTGTTATT GTCTTCCTCA AGCAGTTTAG GTGCATGATC TTCATTTACA 002560
002561 TAGAATACTT GGGTCTCAGA ATTGATGCAA CATAAGCAGG TTTTTTTGGT GACTTACAAG AGCAATAGTT TGAAGCTATC 002640
002641 TCATTTAAGC CTCTCATAAT GCATAATCAT GAGTAGTTTT GAAATTTGCA ACCTGTGAGG TAGAGCATAA ACTCAAGAAA 002720
002721 ATAGCCTTGA ACTTGCAGAC TTTTGACACA AGTTCTCCAC AAAGTGTGAA GAGAGCCCCA GGCATTCCTG ATTGGTCAAT 002800
002801 GGGAGAGCCT AACTTTCATT GTTTTCTTCA GTACAAAGAG TATCCAAAAG CTAAGTTTTT GTATTCCACT ACTTTCAGTT 002880
002881 CAATAAAACC TAGAGTTGTT TCATCTGCGC CTAAAGTGTA TGGCACAATT TTCTTAAGAA TTAGGGGAAC CAGGTGCCTA 002960
002961 CAGTTAAAGG AACGTTTCAG TTCCTTTCAT TCATTCCTGG GTTTTTCTTT TATTTTCTAA GAAGGTTGAA GAAGGATGAG 003040
003041 TGATAGAGAA GAAAGCAACA CCATTGATTT TTTTTTTTAA GAAATGATAT ATATAtgtat atgtttgtgt gtgtgtgtgt 003120
003121 gtgtgtgtgt gtgtgtATTC TGTGCATTAT TTTGTCATGA TCTCAATTCT CTTCTTTCCA CCAAAGTTTG TCGTAATATT 003200
003201 TTCTCCTGAA GGTGCATTCT GGCTCCTTTA AATTAGTCAG TGTTATATTG TAGGAGACTG TCATGGAAAA AAGGACTCAG 003280
003281 TTTACTTTCG TCATTTTCAC AGGGGAACCT TTTAAAACAA TCTTTTCAGC AGCAGATACC TTTAACCCTA ATAATCTCAG 003360
003361 GCCTTGATGA AAATACTATA TTTTGTAGAT TATGGTTAAA GGGGGAAAAT TACTAGTTCC GTAAGATAAA TATGAGCTCC 003440
003441 ATTTGACTTC TGATGTCTGG TTTAGCATTA CATAATATGT TGATCTTACA CTCTGCTTTT GTCCAAATAA AATGCAATAG 003520
003521 TATCAATATC AATTTCAGAA AAATGGACTG AATATGCTTT TTTGGTGATG AAATCTCATG TACGATATTT ATAGTGATGT 003600
003601 GCTTTTATTT TCTCATGAGA TACTAAATAT TAATTGTGTT GTACATTTGT TCTTAGCATA TATTAAAGTT TTGAACCAAA 003680
003681 TGTGTTAAAG CTTACGCTTT GCCATGTAAA TTTCCCAGAA GTTGTTGAGC TCAAATGTAT CCTACATCCA GCTGTAGAAA 003760
003761 TTTGTCAGAA ATTGTTTAAA TTTTGTATAT AATTGTACTG TTTAATTCTA GCCATTGCGC TGAACAGTAT TTGAGTTACC 003840
003841 ATATAATATG GCTTTACACA AGGAAATGTG TGGCTTTTGT TTTGTATTTT TTCAGTATAG AAGTTCCTGT GTCTTATTTA 003920
003921 AATAAAGTTA TTAGTAAAAC TG
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Predicted Small Protein

Name NONHSAT119146_smProtein_2027:2260
Length 78
Molecular weight 8869.4582
Aromaticity 0.0909090909091
Instability index 54.8090909091
Isoelectric point 9.09967041016
Runs 13
Runs residual 0.0327498588368
Runs probability 0.0547062900004
Amino acid sequence MHFPFLITFHILRIRSAFNPRRMIILDMGEHEENQQNLWCLTSLCHVVTSKTTVAFTVST
CVHVAFLKVQVLLSKGL
Secondary structure LLLLEEEEEELEEELLLLLLLEEEEELLLLLLLLHHHHHHHHHLEEEEELLEEEEEEEEE
EEEEEEEEEEEEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH
HHHHHHHLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTT
TTTTTTTiiiiiiiiii