NONHSAT119376
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119376 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1711 nt |
Genomic location |
chr7+:19118622..19120419 |
Exon number |
2 |
Exons |
19118622..19118815,19118903..19120419 |
Genome context |
|
Sequence |
000001 AACAATTCTT CCCTCTGACT AGTTGGAACA CAAATATCTG CCATTTGCAG GTGAGCTCTA AGAATTTTTC AACTTACAGC 000080
000081 TCCCTAGTAG TTCTGAGACT GACCTCATGT TCCAGCCTAT AAATGCATAG TTTAGTAATC AGTCACAGAC TCAGGTCACC 000160 000161 TCTATGCAAA CTCGAATGCT CCTTTTCTAG TCACTTTCAT TGGGTCCCAT CCCTGTCTTA TGGTCGGGAA AATTCCTTTA 000240 000241 GGCAGAAAGA TGATGCAATC ATAAAGCTCA CTTTGTTTAT TTCTCTTCTC TCAAAGATCA CAGTCCTGTA CTGCCTACTG 000320 000321 TCCAATTTGT AAAAATGATT GCTTCATATA TTTTCGTCCT GTTCTCTAGT TGTTTATAGC AGTAAGGCAA AACTGGAACT 000400 000401 GATTACTTTT TCATGGTAGA AGCTGAAGTC TTTGAATTTT CTATTTTTGT CACCTGTACT GTAACAGAGT GGTATAAATC 000480 000481 CCACCTCTAC TACTGCCTAA CTAGATGGAT TTAAATTTAT TGAATTTCCT TTTCCTTATC TGTAAAATGG GCATAAAAAT 000560 000561 ATATACCACT AGATTGTTCA GTTCACTAAT TAGTTAAATA TGGTATAAAC ACATCTAGAA GGAGTATCTA AAGGTTGATT 000640 000641 CTCCTCCTTC TTTCAAGAGA AAAGACTATA AAATAAGACA ATTTCATTAA ATACCCAAAA TATTAAAAGC AAAATTTTGT 000720 000721 GATATCTATA ATAAAAACGG TTTCTGTGGG CTCCCATCCA TGTCTTCAAA ACACATGCTA AGTACTAATT AAACCTATAT 000800 000801 CCTAAATTCA TGCCTCTTTT CGACCTCTGT ATTCAACCAG TTGCTTCCGT CTGTTCATAA GCTCCCATCT CTCCTGTTAT 000880 000881 CAATTTTCCC CGTTGTGGAC TTCACCACTT GCTATCTGCA CACATCATCA TCAACACCAC ATTTTCCTAA CCTTAGTTAT 000960 000961 TAACCTTTCT GTCTGATTAT CTGATCTAAG TATAGAACCC CATGAAACAT TCCTAGTTTG ATCATTTTTC CTGTCAGAGG 001040 001041 CATTCAAACC AGAGCTACTC CAAATCACAA CTGAATAGGG GCTGGGTAAA ATGAGGCTGA GACCTGCTGG GCTGCATTCC 001120 001121 CAGGAGGTTA GGCATTCATA GTCACAAGAT GAGATAGGAG GTCACAAGAT ACAGGTCACA AAGGCCCTGC TGATAAACAT 001200 001201 GGTACAATAA AGAAGCCAGC CAAAACCAAT ATGGCAACAA AAGTGACCTC ATTATATGCT AATTATAATG CATTAACATA 001280 001281 GTAAAAGAGA CTTTCACCAG CATCAGCACA GTTTGCAAAT GCCATGGCAA TGTCTGGAAG TTACCCTATA TAGTCTAAAA 001360 001361 CGGGGAAGAA TTCTCAGTTC CAGGAACTCC CCATCCCTGT CCCAGAAAAC TCATGAATAA TTCACCCCTT GTTTAGCATA 001440 001441 TAGCCAAGAA ATAACCATAA GTATACTCAA TCAAGCAGCC CACGCTGCTG CTCTGCCTAT GGAGTAGGCA TCTTTCACTT 001520 001521 GCTTAATAAA CTTCCTTTCA CTTTGTTCCG TGGACTTGGG GAAAGAATCC CCAAATTCTT TCTTGTGTGA GATCCAAGAA 001600 001601 CCCTCTCTTT GGGTCTGAAT TGGGACCACT TTCTGGCAAC ATTCTTACCT TCCTCTCTTT GGGTCTGAAT TGGGACCACT 001680 001681 TTCTGGCAAC ATTCTTACCT TGAAATTCAC C |
Predicted Small Protein
Name | NONHSAT119376_smProtein_122:331 |
Length | 70 |
Molecular weight | 7994.3427 |
Aromaticity | 0.101449275362 |
Instability index | 44.7057971014 |
Isoelectric point | 9.30072021484 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0390488527743 |
Amino acid sequence | MHSLVISHRLRSPLCKLECSFSSHFHWVPSLSYGRENSFRQKDDAIIKLTLFISLLSKIT VLYCLLSNL |
Secondary structure | LLEEEEEELLLLLLLEEEEEELLLEEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHH HHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTT TTTTToooo |