NONHSAT119413
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119413 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2070 nt |
Genomic location |
chr7+:20257029..20261317 |
Exon number |
3 |
Exons |
20257029..20257245,20257879..20259379,20260966..20261317 |
Genome context |
|
Sequence |
000001 CAGGCAGGCA ACTGCACCCC TGCTTCCTGA GCCACCTGGG ACTTGAAGTT CTACCACTGT GGCTCCAAAG CTGCCCAACT 000080
000081 AGAAACCCCA AAAGGCAAGA GAACTACGAT ACCCACAATT CAGGCTCCTC ACCCGAAACC AGAAGAGGGC GTATGGCTAG 000160 000161 AGTTTCACCC TAAGAAGAAA GGGGAAGCAG GTGGAAAAGC AATTAAAAAA AAATCAGCAT CTCTCTCTAG CCTATTATCT 000240 000241 CCTGTTAGAC ACAGCCCAGA AAATGAATAG AGACAAGTCC TGGCTGGGTC TGGGTTCAGA AACATAATAG AAGGATTCAT 000320 000321 CTAATGTAAG TAGATGGCAG AATGGTGACA AAGAAAAAGT TTCCTTTCCC TTTTCTGCAC TTTCTCTCCT ACTGTTCTAA 000400 000401 CCACCCCTTC CTCCCTGATG CATCCCTGGC TTCATGCTGC CAGATCACCT AATCCACCCA GATTCCCTTT GAAGTTTCCC 000480 000481 CTTGACTCAT CCCACAATCC AAACTGAGCT GTTCTGTTTC TTTTTGTCAC AGGTTCCTCA ACTCTCTACT AGAACCTAGC 000560 000561 TTTCCTTTAT GTCATTATAT TATTTCCAAA ACAAATGGTT CTTAATTTCC CCAAACCCTA CAGAGGGCAT TCTGCATGGC 000640 000641 ATTTCTCCTC CCTGAAACCA TTTTTGCTCA TCTTGAAATG TTCAGAGATT TCATTTTTTC CAAAGCTCAA TGAAAAACAC 000720 000721 TCTTCAAGAT GTCCTTCTCA GTTTGTCTTA ATCTGAGTTA TTCTCTTCCT CCTAATCAAT TTCATAATAT TGCATCTGCT 000800 000801 CCTCTCATAA CACATTGTAT ATCTCATTTC ATTGGTTTAC ATGGGTGTGT GTGTACCTAT GCAGTCTTAC ATTCCTATTT 000880 000881 GAAGGCAAGG CCTCATTGTA TCCCTACTTC ATTAACTCAT TAATGTACAA GTAGATGTTT GTGATAAACA ATCAACACAT 000960 000961 AAAATAACTG AGATGTTAAC TCTAAGGTGT GTGTGTGTTA ATGCCTAATG CCATCTTTAT GTCTCCCGGA AAACATTTAC 001040 001041 ATTTAAAAAG CTACCTAAAT GCCATGCATG AGTACTGTTA TCAGAATCCC CCTGCAGTCT GGTCTGGTGT GGCTCCCACA 001120 001121 GCCTTTATTT GCAGAAAGGC AAAGCATTAA ATCTAGCAAT TGAACCCTTG ACAGTACCCG AAATGAAAGC CCTAGTGGGT 001200 001201 CAGCACTCAC TGTTTACCAG CTCCAATCCC TGCTGTGCAC TTGCCTTTCT AACAGCTCCC CAAGGACTGG GCTCCCTAGA 001280 001281 GTCCTCAGTC CCATGGTCCT GGAAACCTGG CCCTACCTCT ATCTATGATT TTTGATTATC AGCTCCAGCA TTTATGGATC 001360 001361 CCTTCTCCTA TTATCTAATC TACGGGCTCT AAAGATTAAA CTGTGCACTT TGGACTATTT AAATAGTTCT TAACCACTGA 001440 001441 TCTCCTCCCT CAGGGAAGGG AATTCTTTCC ACAGTTGCTA GTTCCTCACA CCTCTGCCTC TATGGGATTC TCCTGGTCCC 001520 001521 CACATGCTCT GCTGTGTCTT CTAGCTGTCG GCCACTGTGG AGGAAGTGAA CCTTCTAGAT CCTGCTGACT CATACAATGA 001600 001601 GTTTTGTGTG GACCATCAGA CAAAAGGGCT GGCTGGTGAA GGTGGCTGTT GTCTGGAAAT TCCTCCCAGC TCTCCTCTAA 001680 001681 TTATGTCATA AGGACTGGAG GCCCCTTAGC CTGCTTGTGA TAACACGCAA GGAAATATGG GCCAACTCTT CACATGAACA 001760 001761 CAAGATATTT CCATGCTAGC CTTTTGCAAG TAACAACAGA GAGAGCTCTG TGCAGTTTTC ACTGGAATGC CTGTGGATTG 001840 001841 CTTGTGTCAT AACTGTAATC TAAAGAGTTG TCCATTTGTT GATTCCTTTG TATTTGTATT GGTAGAATTG CCACTATCAA 001920 001921 ACCAAGATCT TTAGCTGCCT TTGTATCAAC TTCTTTGGAG CTTATGTGAT TTTCCAGAAA ATTTCCAAGG CATAGTTTTG 002000 002001 TCCCTAAGTC CCATGAATAT GTAATATTTT GTGTCTCTCT ATTAAAATAG CACTTTTTGT GCATTCCATT |
Predicted Small Protein
Name | NONHSAT119413_smProtein_728:922 |
Length | 65 |
Molecular weight | 7064.2029 |
Aromaticity | 0.09375 |
Instability index | 42.5640625 |
Isoelectric point | 8.38299560547 |
Runs | 7 |
Runs residual | 0.03921875 |
Runs probability | 0.0461932520757 |
Amino acid sequence | MSFSVCLNLSYSLPPNQFHNIASAPLITHCISHFIGLHGCVCTYAVLHSYLKARPHCIPT SLTH |
Secondary structure | LLEEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLHHHHHHHHHHHHHLLLLLLLL LLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL LLLL |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii iiii |