NONHSAT119477
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119477 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2592 nt |
Genomic location |
chr7-:22656104..22671677 |
Exon number |
5 |
Exons |
22656104..22657297,22659090..22659295,22659391..22659558,22669226..22670060,22671489..22671677 |
Genome context |
|
Sequence |
000001 TTACGAAAGG GGGATGATCT GGTGGCCTGA CTGAATAACA TAAGCCCTTT AAAATCAGAG AGTTTTCTCC AGCTGGTGGC 000080
000081 TGACAAGAAA GGCAGAAATT TGACACAGGA GAATTTGACA TATTTTTATT GGCTTAAGAA GAGAAAGGGC CACGTGGTAA 000160 000161 GGAATGTAGA TGACCTCTAA GGGCTGAAAA GGATTCCAGT TTACAATTGT TAGCAAGCTT TACCACATTC TGTGTGGCGA 000240 000241 AACAAGGGAA TTTCTGGAAG AACCAGTCAA GGAGAACAGG AGGCTTGACC AGTAGCACCC TGCGCACTTG GGCTGGGGAG 000320 000321 CAGCTTCTGT GGACTCCACA CAGAGCTGAG CCTGGGACAC CAGGATCGGG TCACCTAGAG GCCTGTGTGA CTTCAGCCGC 000400 000401 AGGAGGGATG AACATGTGAT GGCAGGAGCA GCAGAGATGT GTTGCCCTTG ATTCCCGCAC TCTGGGGCAG CCTGACTCAG 000480 000481 CGACAGTATG CAGGTGGGTG AGCGCCTCCT TCCTTACTCA AAGCCTCAGG CACCTGCCAT TCTGTTCTCC CCTAATAGCC 000560 000561 CTGGGTCCTG TCTGAGCCAG GGGTGATAGT ATTTGGCCTC AATGAGTGTT CAATGACTGC CAGAAAGAAG AGCTCAGTTC 000640 000641 TCCACCAGCC TGCCCCCATG GATCCCCAGC AGGCCACCTC ACCAGGCAGT GGGACGCAGA CTAATTGTGT TTGTCTCCCA 000720 000721 CTCAGACAAC TGTTCAGGCC CATTTTGAAA TCATGCATTA CATATTTCTA GAGACATTTG TAAGTGCAGC AAATACATTT 000800 000801 AAATGTTTTG TTGTTGGCTG GTTAAGAAAG AGAAAAAAAA TTAAAAATGA GCATAGGGAC CAGGATCTCC ACCAAGCTCT 000880 000881 TTACTGGAGT TGGTCTTCAC CTTGAAACCT TCATTGCAGA GGCACTGGTA TCCGACAGTG ACCTTCATCC CCTTACCTTG 000960 000961 GGCCTTTTCT ACTGCAAATG TGGTCCCTTG TACCCATCAG TTCTTCTCCA ACTCTTTTCC TTCCTCAAAG AACTAACTTT 001040 001041 TGGCTTTGTT TGCTTTCCCT GTAATATGTT TTTTAATCTA TTAATTCTGC TCATTAATAT TTTTTCTTCT GTTTTCCTTG 001120 001121 GATTAAATTT GTCTGAATTA GGCTTATTGA TTTTCAGTCT TTCTTTTTTC TCTCATCTTA AATATTCATT TGGATCCTTG 001200 001201 AGTTATTTAG AAGTATGTTG CATAATTTCC AAATATTTCG GAGATTTTCT AATTATCGTT CTCTGATTTA TTTATATTTT 001280 001281 AATTCTATTG TAGTCAGAGA ACATATTACA TATAATTTGA ATCCTTTGAA AAAAAAGTTA AGACTTCCTC TTAGGCTAAC 001360 001361 ATACAGTGTA TTTGGCAATG TCTGCTATTA GCACAATGTT ACAGCTTCAA AATCTGGAAG ATGTCCTAAA CAGGGTGGCT 001440 001441 GGCTGTGTGT TTGAATGGCA AGACTTCTTC CTTTAATTAG ACTTTTTCCC CTTAGCACCA TGAAACTAGA GGAGATTTTA 001520 001521 TTATGACTTT TTGAAGTCTT TAAACAAATG TCCCAGCCTT CTTTGCATAG CCCCTGAACC CAGAAGATGT CCCGGGGGAA 001600 001601 AACCAGCTAT GTGTTTAGCA CTTACCAAAT TTCTGGTTTC TCCCACCAGC CCCACGTGAC TGCCAAAAAC CTCTCTGGTT 001680 001681 TCTCTTTCCC CAAGTAGATT CCTTCTTTAT AAGTCAAGTC AAATTCTTAG TCCATGCCCA GAATTGTAAA ATGTCCCCAG 001760 001761 GGAAGAAAAC AATTGGTGAT TTATGTAGCC TTCATTGCTT CCTCATTTTC TGAGATTCTT AAAAATGTGA CTTTCTTAAT 001840 001841 TTATCTGGTT CTTTATAATT GTTGCAATGG GAATTCTAGT CTGCTACGAT CTTACTACGT TTTATTCAGG AACAGAAGTC 001920 001921 CCCTGATCTT TATGTTTTAA GAGTAAAAGC CCACTAATAT GGGTACGACT TCAAAGATTG AAAAGGGCTA TGGCCTGCTT 002000 002001 TCAGTACTTG GATTCCTGGA GGAGTGAAGT TACATTGGTG GTCCAGACTT GGGCCCTTAA TTGCAGAGGC TCTGAGAAAA 002080 002081 TAAGTCATAT GGCTTCAGGA GATATTGCTA GACTTGATGC AGGGAGGAAA GCTGTCAAAA TGAATGGGAG GTTTTGAATG 002160 002161 AACCATGTAC CCTTGCAGTA ACAATTATAG TTAGCAGCAA TCAAAACTGA TAAAATGACT GAGTCTCTCC ATTTTCCTAG 002240 002241 ATATAAATTC AAATATGATT GAAAGATAAG AAAGGTGTCC TTCCATCTTT TTATGGGTGG TGTTTAAATT AAATTAAATT 002320 002321 TGATTCTGAA AACTGAATAA ATTTTTACTC TGTGTTTCAG AATACTTGTT GTACTGTTAT TCTTACAGGT GTGACCAGGC 002400 002401 AACTGAGTAT AAAATTGATT CAGAGATATG GTACTTTGAA TATGAAGCTT TATGAGTACC TTAAGTTTAT TTTGCTTATT 002480 002481 TTGTCTTTTT TCTCCTATAT ACACACACAC ATGCACATGT GTGTATATAC ATATAAATGT ATATATTAAA TATGTATGTG 002560 002561 TGTGTATATA TATTTTGCTC TACTTTCTAT TT |
Predicted Small Protein
Name | NONHSAT119477_smProtein_1733:1939 |
Length | 69 |
Molecular weight | 7960.4746 |
Aromaticity | 0.161764705882 |
Instability index | 58.1191176471 |
Isoelectric point | 9.85406494141 |
Runs | 12 |
Runs residual | 0.0359697933227 |
Runs probability | 0.0631513866808 |
Amino acid sequence | MPRIVKCPQGRKQLVIYVAFIASSFSEILKNVTFLIYLVLYNCCNGNSSLLRSYYVLFRN RSPLIFMF |
Secondary structure | LLLEEELLLLLLEEEEEEHHHHHHHHHHHHHHHHEEEEEEELLLLLLHHHHHEEEEEEEL LLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHH HHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTT TTiiiiii |