NONHSAT119502
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119502 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2564 nt |
Genomic location |
chr7-:23140847..23145322 |
Exon number |
3 |
Exons |
23140847..23143197,23143869..23143936,23145178..23145322 |
Genome context |
|
Sequence |
000001 ACACAGTGGC GCGCCGTTCC GAGCAATGCG ACTGCAGGCA CAGGTGCGGC CGGATTCCCT GTCGCTGTCC CGCGCTGAGT 000080
000081 GAATTTTGCC TCGGAGCTGG TCCGAGGTCG CGCCTGCTCT TTTGTGTGCC CAAGGCAGAT TTCCAGAAGT AGAAATCTGT 000160 000161 CTTCTAACTC TAAGGCCTTG GGAGATGAAG GATCCGTGAT TCAAAGGCAG AAATAGATGG AGTCTTGCTG TGTTCTCCAG 000240 000241 GATTGAGTAC AGTGGCTTAT TCACAGATGT GATCATACTA CACTACAGCC TCAAACTCTC GGGGTCAAGC AGTCCTCCTG 000320 000321 CTTCAGCCTC CTGAGGAGCT GGGACTACAG GCCCACATCA CCGTGCCCAC TAGATTCACA GTCATTTTGC TTGTGGAAGG 000400 000401 TCTTGCCTCA ATGTTGATAG GTGCTGACTG ATCAGGGTCA GGTTGCTGAC TGATCAGAAT GGTAGTTTCT GAATGTTGGG 000480 000481 AATGGCTATG GCAATTTCTT AAAATAAGAC AACAATGAAG TTTGCTGCAT TGATTGACTC CCTTTCACAA AGGATTTCTC 000560 000561 CATATCATGC AATGCTGTTT GATAGCATTT TACCCATAGT AGAACTTCTT TCAAAATTGG AGTCAATTCT CTCAAACCTT 000640 000641 ATCTCTGCTT GGTCAACTAA GTTTATGCAC TATTCCACAT CCTTTGTTGT CATTTCAACA ATATTTACAG AGTCTTCACC 000720 000721 ATGAATAGAT TCCTTTTCAA ACAACCACTT TCTTTGCTCA GCCATAAGAA GCAACTCTTC ACCCATTCAA GTTTTATCAT 000800 000801 GAGATTGCAG CAATTCAGTC ACATCAAATT CCACTTCTAA TTCTAATTGT TTTTCTATTT CCACCACATC TGCAGGTACT 000880 000881 TTCTCCACAG AAATTTCAAA CCTCTCAAAG TCATCCGTGA GGGTTGGAAT CAACCCAAAT TTCTGTGAAT GTTGATATTT 000960 000961 TGACCTCCTC CTAATCACAA ATGTTCTTAA TGGCATCTAG AATGGTGAAT CTTTTCCAGA AGGTTTTCTA TGTGCTTTGC 001040 001041 CCAGTTCCAT CAGAAGAATC ACTGTCTGTG GTAGCTCTAG CCTTATTAAA TGTATATTTT AAATAATAAC ACCTAAAAAT 001120 001121 CAAAATGACT CCTTGATCCA TGGGCTGTAG AATAGACATT GTGTTAGCAG TCATGAAAAC AAGATTAATC TCCTCATATA 001200 001201 GCACCATTAT AGCTCTTGGG TGACCACGTG CATTGTCAAT GACCAGTAAT ATTTTGAAAG GACACCTTTT TTTTTGAGCA 001280 001281 GTAGGTCTCA ACAGTGGACT TAAAATATTC AGAAAGCTGT GTTGTAAACA GATGTGCTGC CAGCTAGGTA TCGTTGTTCC 001360 001361 ATTTATAGAG CACTGGTAGA GCAGATTTAG CATAATTTGT CAGGACCCTA GGATTTTTGG AATGGTAAAT GGGCACTGGC 001440 001441 TTCAACTTCA AGTAACCAAC TGCATTAACT CCTAACAAGA AGAGTCAGCC TGTCCTTGAA AGTATGAAAA CAGGCATGGA 001520 001521 CTTCTCCTCT CTAGCTATGA AAGTCTTAGA TGGCATCTTC TTCCAATAGA AGTTGTTTCA TGTACATTGA AAATCTGTTG 001600 001601 TTTGGTGTAG CCACCCTCTT CGATGATCTT AGCTAGATCT TCTGGATAAC TTGCTACAGT TTCTACATCA GCACTTGTTG 001680 001681 CCTTACCTTA CACTTTCATG TTATGGAGAT AGCTTCTTTC CTTAAACCAC AGGAACGAAC CTCTGCTATC TTCTAGATTT 001760 001761 TCTTGGGCAA CTTCCTTACT TCTTTCAGCT TTCATAGAAC TGAATAGTGT TAGGATCTTG CTCTGGGTTA GGTTTTGGCT 001840 001841 TAAGGGAATG TGGTAGCTGG TTTGATTTAT TTAGACCACT AAAGCTTTCT TCATATCAGC ATTAAGGCTG GTTTGCTTTA 001920 001921 TTATCATTTA TGTGTTCACT GGAGTAGCAC TTTAAATTTC CTCCAAGCTT GTTTGCTTTT CACTCACAGT GTGGCTGTTT 002000 002001 GGTGCCAAGA GGCCTAGCTT CCCAGTCTTG GCTTTCAACA TGCCTTCCTC ACTAAGCATA GTCATTTCTA GCTATTTTAT 002080 002081 TTAAAGTTAG AGATGTGCAA CTCTTCTTTC ACTTGAACAC TTAGAGGCTA TTGTAGGGTT ATTACTTGGC TTAATTTCAA 002160 002161 TATTGTTGTG TCTGGAGGAA TAGAGAGGCC TGGGGACACA AAGAGAAATG GGGAACAGCT GGTCACTGGA GCAGTGAGAA 002240 002241 CACACGCAAC ATTTATTGAT TAAATTCGCT GTTTTATGGG CTCGGTTCAT GGTGCTCCAA AACAATTATA ATAGTAACAT 002320 002321 CAAACATCAC TGTTCACAGG TCACCATAAC AGATATAATG ATAATGATAA TAATAATAAT GTTTGAAATA TTGCAAGAAT 002400 002401 TACCAAAATG TGACTCAGAG AAACAATAAA GTGAGCACAT GCTGTTGGAA AAATGGTACT GATAGACTTG ATCCATGCAG 002480 002481 GGTTGCCACA AACGATTAAT TTGCAAAAAA AACAAACAAA AGAACATGCA GTATCTGTGA AGCACAATAA AGCATACTGC 002560 002561 AAAT |
Predicted Small Protein
Name | NONHSAT119502_smProtein_2288:2428 |
Length | 47 |
Molecular weight | 5421.3797 |
Aromaticity | 0.0434782608696 |
Instability index | 66.8130434783 |
Isoelectric point | 5.37628173828 |
Runs | 8 |
Runs residual | 0.0125517598344 |
Runs probability | 0.0307255785196 |
Amino acid sequence | MVLQNNYNSNIKHHCSQVTITDIMIMIIIIMFEILQELPKCDSEKQ |
Secondary structure | LEEELLLLLLHHHLLLLEEHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PRMN | - |
PiMo | - |