NONHSAT119567
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119567 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7652 nt |
Genomic location |
chr7+:24375227..24383115 |
Exon number |
2 |
Exons |
24375227..24375804,24376042..24383115 |
Genome context |
|
Sequence |
000001 TTCAAATGGA TTTACAACTA GAAATGACAG ACACAagggc tgcactatga cttttgggga ctctagccac ttttgccatc 000080
000081 atgggccctt tcttccataa aaaatatttt aaatggtatt tcatgactaa ctacacaggc ttaaagatga gtataattca 000160 000161 agctggactg tatttttttt cttctgactt taaaagaaat taaaacctct tcatggacca ctaataacat cgtgagcctt 000240 000241 gggcactctg tgtattgcac caaatggata agtcagctct gGACAAACTT GTACCAAGGC AATATATTTC CTCACTTCAG 000320 000321 GAACCAGCAA GAACTAACAC TAAGGAGAGG CCACTTCTTC TACATTCTGA AATTCTGATT ATTAAAGTCC GATAATGAGT 000400 000401 CCCAGTGTGT CGTGGTGGCC AAAGACCATA TATGATATCT CCTGTCTGGA TGGAGGTTAC ATTCATCAAT GACATAGCAA 000480 000481 TTGTCCTACC TCTACAGCTG TGTCCTCATC ACTCATGTAT AGTCATTCAG AAACAGTGTg gagaccaagg caggcagatc 000560 000561 acttgaggtc aagaattcGG AGAGGAAGGA GTAAGTTGAA GAAAGACAAG GATGACAAAC AGGAGAGAGT ATGGGGTGTC 000640 000641 TCAGCACTGC CAACTGGGAA CTGAGCTTTG CACTCCCCAT GACAGATTGG AGCTAATGGC TGAGAAATAT GATCCTGAAA 000720 000721 CTATCCCCTA AATGCCAGTT CAAAGAGTCC TCCTTCTCAC ACAATGACTC AGTGGAGGGA GGCGGCAATC TGAACTTGAT 000800 000801 GATGGAACGA CAAGGCAAGT GTCGGTTTGT TTTTCCTATC AGGTGTCGAC TTCGCGGAAA GCTCCATCTC AATTGCCATG 000880 000881 AGTCAAAACT TGATTGCTGA GAGCAAGAAA GATGGGTACA GCAGGAGTCG CGTACTTAGT CACCCATACA TGTTACAAAG 000960 000961 TTCATTCAGA GTGTCCTGGG GTCTTCAGCT TCAACAGCAG CACCTCAGAA AATGTCCAAA GGGCAATTTT CCCACAGTAT 001040 001041 CTGGGATGAC AAGAACCATC CTCAGATTCT GGACCGGCTC TAACTTGGCA AGTTAGACTA GAATCACATG CACAGTCCCT 001120 001121 GGTGTGGTCT CTACTTGACT ACTGTCCTAG GAGCCAAATA ATTGGTGTAG TCAATGTGCT TTACTTGGGG GAGGAAGGGG 001200 001201 TTGATAGTGA AAAGATATGA ACAATTAAGA AAAGAGATTA ATTTTAAATT AAGCTGAATG TCAAGAAGAT TAGCGTAACT 001280 001281 CTGACTTCTT TACCAGAAAC AGACTTCTAA AATGAGACTT AATCTAAAGA CATAAATAAA AAATATCCCT TTAAATGATG 001360 001361 TATGGAAATA TGAGCGGACA TCGAGTGAGG AAGGCAGGCA GTTGTGCTGG ATCTAAGTAA GTAGGTGTTC TGCAAATCAA 001440 001441 TCCACTTCAC AGAGTCATTT GTGGAGCTAT TGTTCAGGAT ATTTGTATTT GAATAGAGCT TGTCTCTCTC CTCACCCTGC 001520 001521 CTCTCTATCC CAGGAGTCTA GAATGAAGGC ACAAACTTCC ACCAGGATGA CTGTGGCTGG TTGCCATGGA AATAGCGAGA 001600 001601 AGGCACTGGA TTCAGCATTT GACTTCACTG TGGATCACAA GCCCAAGCAT GAAGACTGAG TCGCGTTTAA CTAAGAGACT 001680 001681 TGCTAATTAA TGGAGCGCCA GGTACAGCTT AAAGAGAAAG TCACACAGTA GATAAAGCTA AGTTTTCAGG GCTCTCAAAA 001760 001761 GAAATAATCG CAGCCCCAAG CGGACTGTGG AAGAGAATGC TTTCTCCTCT GAGATCTATC TTCTTTTGAG TTCTGACGGC 001840 001841 CACTTTTCCC TGACTCTCTG GAGGGAGGTG GAAATGGAGC CATTTAGGAA ACCTTCCAGC TAATTGAATT CAAGAAgtcc 001920 001921 atctacggac aaatggataa agaaaaagtg gtatatatgc acaatggaat actatttgac cataaaaaag aatgaaatac 002000 002001 tgtcatttgc agcaacatgg atggaactgg tggttgttat gttaagagaa aaaagccagg cacagaaaga caaatgctgc 002080 002081 aaattctcac tatgtgcaag tttaaaaaaa tgatcgcatg gagatagaga atacaatgat aaatactaga ggctgggaag 002160 002161 cgtgtgtgag tcagtgggga aggatgaaga gaggttggtt agtgtgttag atggaagtta gatagaagaa ataaccccaa 002240 002241 tatttgatag cagagtagga taactacagt ctgcaacaat gtaatatatg ttttcgagta gcaagaagag agggcttgaa 002320 002321 atgctcccaa cacataaaaa tgataaacac tcaaggtgat ggacacccca aatgctctga cttgatcatc acacattcta 002400 002401 tgcatgtaac aaatattcac atgtacccca taaatatata acattttgta tgagtaaaaa aaaaaaAAAA AAGAGAGAGA 002480 002481 GAGAAAGAGA AATGAAATGG CACAACTAAA TCCTCAAAAG GCGACGGTGA TTTTCCCAGC CCTGATCTCA CTCTGCCTCT 002560 002561 TTGTCTCTGG GGGGCAGGTT CTTGGAAGGA GACAGTTTTG GGAAGACACC TCCACTACCC TGCTATGCAC TGCCTCCCCT 002640 002641 CCCTTCTCAT TCATAGCTCT TCCCCTAGCA AAATACAAGT TCACCACCGC CTCCCCTTGG TCTTCTTCCT CCCTCGCTTC 002720 002721 CTGGCCCATT TGCAAGGCCA TCTCTTGACC AGCCAGCAGA AATGCAAGAG CATCTGGTGT AGCAGAGTCC GTTTGAATAA 002800 002801 AATGTGAAAG CACAGTTGTA CTCCAGTCAG TGCACAAATA CCAGCTGGTG GAAGTGGAAT AGGAAAATCA TTTCCTCACT 002880 002881 GGTAGCCCAT TTTTAAACAC TTCATAACGA ATGAAGAAGA TTGAATTGGT CATTTAAAAG ATAGCAGATt tcattccaca 002960 002961 aatgccttct gagtgccatt tactgaactg ggtgctgggg aggtttctta ggtaaatcag acagattcct actgtcaatt 003040 003041 acacaattgt caagcagaca ATTCCTGCAT CACATGGAAG GAATAAGCCT GAGATGCCTG GTGAGATGGA ATCTAAATAG 003120 003121 CATGCCAGCC TCCTCTTCTG CGTCTAGAGG TGAAGTCACC CGAAGACATA GTTTAACATT CACAGGGTGC GCCTCCGTGC 003200 003201 TGAACACATA TGGTTGAATT TGGCTCATAA AGGTGTGTTG TGCTACAGCA CTGGATAGAA GTTCTGCTGA GCTTCTGCTG 003280 003281 GGGTCTAGGG CCACTGTGGG CAGTGTAGCA GCTATTGCAG TGTGCGGCTA TGGTGAGAGG CCACTCCAAG TCCAGCCCGT 003360 003361 TGGTAAGGTA GCCAAGCTTT ACTAACAAGG GCTTACTAAC GGGCTGAGCT GATGACATAT AAAACCTGTG ATCCTTTAGC 003440 003441 TCCAGTTTAG GGTCccacta tggcctgggc agggatttgg accagctgag gcgtggccat aacagcagaa aagcatccac 003520 003521 ctggctgtgc atgacaaggg ttccataata atcccacgtg ggaacaacta aagccacaat ggtaatagac tgaccagagt 003600 003601 gacctctttc tcctggcaca cagaagcaaa actaacctct tttaaataaa acttcaagtg ttaacaattt ggggtggaaa 003680 003681 agaggtctca aaggtgagat aactgacttt ctgctaatat aaacacatga gtgctcaatt aattggataa ataaaagagt 003760 003761 aaaagccaaa atcctttcac tggtctaccg gatctcttgt atactgccct ctctctgatc tcatttctga tctgcttaac 003840 003841 cgtgctcact cagcaccagg caaggcagcc tctttcctgt ttctcaaaca tgctctcacc tcagggcctt tgcactgctg 003920 003921 atccctgtgc ctgaaatact cttcctgagt gcttcacctg tcgggactct gctcagacgt taccttattg gtggtcttcc 004000 004001 cttgcaacct catagcactc cctcctgcca gcattctctc tctttccatc cacttttgct tttacccaca gaacgaatca 004080 004081 ctatctcata ttacatattt accagcttat cacctcttac ccctatttga atataagttt cacaagggca gaggctttat 004160 004161 ttcttactgt tacactagca ctcaaaattg tgtttggccc acaataggtg cttaataaac attagatgtt gaaggaGATG 004240 004241 TGAATCTATT TGTACCCCAA TTGTGGGGGT TGCATTcata catgtaacaa ataaatacta acataagata gggtcataag 004320 004321 agtgagccag ataaaatgtt ctcagaatct agaagaagga gagagaattc caacagaaag aaatcaagga acagttcatg 004400 004401 gagaagggac catttgatcc gtaaaagatg gattggattt gaacatttgg ggatgggagg gaagtttcag tgaaggacat 004480 004481 taacatgagc aaatgcatag aggtattaag aacagcTTCT TTTAGCTAGA ACAGAGGAGT ACAGAAAAGA TGGTCTAAAA 004560 004561 GGTAATGAGC TTAGATTTTG AAGGGCCTTG CTCTCTATTC TCTGAAAATT AATTAATTAT AATTCTGTAA AGTCTGTAAT 004640 004641 TATACACCAG AGACTGATGT GTAAAACAGG TACAAATCAA ATTCAGAGCC AGCTAGGTAG GGCAAGGGGG ATACAGGCCT 004720 004721 CCTAGACCAC ACACCCACTC TCCTTTCTAT GAACCCCTAG GGCACTGCTG TTCAGAGTCT AAAAATTACT GTTCTATaaa 004800 004801 tagagagcta tcagaggtgt ttgggctggg gagaaactgg attagagcta tgtttcaaaa agattaatcc agcaaccaaa 004880 004881 agacaaattg gagagggaag gcactagatg cgggaaaacc agttatggta ctcttgccac tgtctggatg agaggtaatg 004960 004961 AAAGGCACAA CTTAGGCAGG TGAATCACAA ATTCATGAAT TAGGACTCTG GCAACATGAG AAAATGACTA TGAGGGAGAA 005040 005041 CACCTGGATT GGGTGGTAGG GTTGGGGAAG CTGACTCAGG TGGTAGGTGT CCAATGGGCA CCAGAAGCTC AGGTTGACTC 005120 005121 ATGCCTGTAC CAATATCTCT GAGTTAGGAA GATACGAGCA TCCAGGACTG TTACAGATCT TGCAGATGTT CATGTCGTTC 005200 005201 TTCCAGGTCA ACTATATTCA CTGCAGGATC AAGTCATCAC TTTGGAATAT GGGAAATCAA GAAAACAAAT CCAAAATCCA 005280 005281 GGGAAAATCT TAGAGCTCAA AAAGCTAAAG TCCCCAGTTC ATCTCCCAAA GTCAGACTgc tgagcctggt cggagaaaat 005360 005361 cacacagctc tgcatacagg tgctactaaa gtgtagtctt taggttgttt gaggacatga agtcttccta tgtgtccttt 005440 005441 atcaatttat tcttctaccc acttgacaaa atattagtac tctcctcgag cccctactct actactttgc ctctgatttt 005520 005521 cagcagacag ccatgttcct tctctctggg aTTGATGAAT tccagcccaa tattttaaat gctgtctcag gggtgaagtt 005600 005601 tccacaatct gtaactcttc ccatgatctc ttctctgtgt ccaaaactac ttatctatct attgaatatt ccacagacac 005680 005681 ctcaaaaaca gcctggccta aacagacttg atttctaccc ttaaatctat tcctcctcat ctctttttct atcatagtaa 005760 005761 atggcaacac cgtttaccca gaggcaccag cttcacagct agaaactatc ttattccctt tagtgttgct acaaagggat 005840 005841 atctgaggct gggtaattta taaagaaaaa aagattcatt tggctcacga ttctgatgtc tggaaaagtt caagattggg 005920 005921 ctctgcatct ggggatgctc tgaggctggt tccagtcatg gcaggagaat gggaactggt atgtgtggcg atcacatggt 006000 006001 gagtgctgaa gcaagagttg gggaggtgcc aggctctttc taaaccagct ctcataggaa ctaatggagt gaggactcat 006080 006081 tagcatgaga aaggcaccaa gtcattcatg agggattcac ccccatgatc caaacacatt ctattaggct ccaactccag 006160 006161 aatttggatc aaatttaaac atgagcttca gaagaacaaa cattcaaact atggcaccat agcactatcc ttgattccaa 006240 006241 tccatcagca agtttggcct accatatata gagagagaga gagagtaaaa aaatatttta catatataca cacacacatg 006320 006321 cttccctctc catgacaaca ataacccctt aactaagcca ccatcactcc atgcctggac cacacccaca gtctcttagc 006400 006401 tggtctcttt gttagctctc tgccattctc cctccatttc ccacacaTCC AGACATCTCC ATGTATTCAt cctcatctca 006480 006481 attcacctct tagcagcgtt taacactatt agccatttcc tcctttttga attctttgtt ccttggcttc cagacatatc 006560 006561 agtcttctgg ctttcctcca actgtgtggg ccttctgttt tttaggtttg tccttgtcgt ttagctgtta aatattaaag 006640 006641 atcctccaag ctctatccta gactctcctc ctcttactct atattctcca tgatctcatt agtgcccaca acatcaatta 006720 006721 tgctaatgac tatgctgatg actaacatat ttggatgcct agcttgcatc tcttctttga gctccagacc tatatattca 006800 006801 gctgcctcct tgacatctct tgaatatctc aaagtatctt aaattcatca tggtaaaaac taagctaaaa tcgaattcct 006880 006881 tccccaaacc tggccctctt ctaaggcttc ttagcccagc acaaggccct agagtccatg cagtttgcat aaaccagaac 006960 006961 caagagtccc ccttaacacc tgcctctccc tcatccctca ggcccaTGTC CTTATATCTA ATTTGATGGC AAATGGGGTA 007040 007041 gccacttccc agcctgggta aatgtcttaa agtctcttgc cttggttttc acacctgtga aattggtctt ataaaagcac 007120 007121 ctatctcata aggctactat aaacagtaaa tgagataata tacgtaaggt atttagaatg gtacctagca cattatttta 007200 007201 aaaaaggcat tcagcaactg ttaaatatga ttATTatcca atgcataatg aaatcctgcc aatagtgctt ttaaacaaat 007280 007281 tttaatcagt tcatcttttt ccttgggcac ctttgccacc ctagcctaat ctatcatcac cacttacttg gactactgca 007360 007361 atgcagtaga ctcttaaccg gcccactctg tccctttgcc cccatctctg ccacaaaata tctcctccac aatgcagaca 007440 007441 gaatggcctc ttcagaatgc aaacctgatc accttacctc ctacctcttc tcccccaagt cctcacattt ttcagtgact 007520 007521 ccttgctggt tttgggacaa atatgaaact cctcctcatg gccctgcctg cctcaggccc tgtccacctc tccagctcac 007600 007601 tctcaccctc tgctcctgac acgttaacct cccttagact cttgtctggc cc |
Predicted Small Protein
Name | NONHSAT119567_smProtein_2624:2806 |
Length | 61 |
Molecular weight | 7000.3662 |
Aromaticity | 0.0666666666667 |
Instability index | 73.54 |
Isoelectric point | 11.018737793 |
Runs | 10 |
Runs residual | 0.0169326241135 |
Runs probability | 0.0453100158983 |
Amino acid sequence | MHCLPSLLIHSSSPSKIQVHHRLPLVFFLPRFLAHLQGHLLTSQQKCKSIWCSRVRLNKM |
Secondary structure | LLLLLLEEEELLLLLLLEEELLLLHHHHHHHHHHHHHHHHLLLHHHHHEEEEEEEEEELL |
PRMN | - |
PiMo | - |