NONHSAT119644
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119644 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3943 nt |
Genomic location |
chr7+:26537616..26541560 |
Exon number |
1 |
Exons |
26537616..26541560 |
Genome context |
|
Sequence |
000001 CTTTTTTCCC GGGAACTAAG TGTTAAACAT TTACCAGCAC ACCACTGCCT AGACTTGTTA GGAAATTCAC AAGTGAGAAG 000080
000081 AAATTCTGTG ATTCCAGGAG ATGAAAGAGG GAAGTGTAAT GAGAATATCA ACTTGAGTAT TTTATCCGTT GCTTTCTTTA 000160 000161 ATTGGGTCAT TTCAGAGGGT GGGTAGATTT TGTTAAGACA GTTGAAATAT TTAGGTAGGT AGAGGGGTGA GTGCAGTTGA 000240 000241 AGAGTAAAGG CTGTTTGGGG CAGACAAAAG GATGATAGCA CTCTTTCAAG TGCTCTGCCA CCAGCAGTAA AAGTCGGGAG 000320 000321 AAGGACCTAG CACCAGGACA CGTGATCTGT CCGGCGTAAG CGAGTGCTGA GTCAAAGGCC TGCAATTCAG GCCCCTGCTC 000400 000401 TGGGGCACGG TCAGTTTCAG CCAGGCCCAA CTCTCTTTCC CAGGTCCATG GCGTGGATGG CACCCAGAAT CCAGCAGGGG 000480 000481 AGTGCTGGTG GATACACCTG GGAGGGCCTG GTGGAGGATC ATTTGCGTGC AGAAATAAGG AAATAGACAT ATTTGAGCTG 000560 000561 GAAGAAAATC TTACATGTCT GATCCAATTC TCTCATTTCA CAGATAAGGA AAAGGGGCCC CAAAGAGTGA AGAGGGGATG 000640 000641 TCCTGAGGTC ATGAGGCTGG CTTACAGCAA GGATCTGGAC CAGACAGCAG GGTGGGACCC TCAGCTGTCC CCATACTTGC 000720 000721 TGCTTGATAT TGGATAGGTT ATTTAGGCTC TATGTGTTTT CTCATAAACA CATAGAGGTT AGGTAAAAAT GGTGGTGTGA 000800 000801 GAATGAACTA ATACATGTAA AGAGCTTGCA TGTAGTAAGC TCTCAATAAA TATTAATAAT ACTGGGCACA GTGGCTCACA 000880 000881 CCTGTAATCC CAGCACTTTG AGAGGCCAAG GCGGGTGGAT CCCTTGAGGT CAGGAGTTTG AGAACGCCCT GACAAACATG 000960 000961 GTGAAACCCC ATCTCTACTA AAAATACAAA AAATTAGCCA GGCATGGTGG TGGGTGCCTG TAATCCCAGC TGCTCGGGAG 001040 001041 GCTGAGGCAA GAGAATCACT TGAACCTGAG AGGTGGAGGT TGCTTTGAGC CCAGATCATG CCACTGCACT CCAGCCTAGG 001120 001121 TGACAGAACC AGACTTCATC TCAAAAAAAA AAATTAATAA TATAGAGCCC TTGTGTTGAC ACTATTCTCT TTTACAGCCA 001200 001201 GAAAGAGAGA AAGATTACAG AAAATAAAAA TATATTAATA TATTAAAGGC ATAATACTGT GAATTAATAC TGATTAATTC 001280 001281 AATATACTAT TATATCAAAA ACCAGGATAC TAATAATAAA TAATATATGG AAAACCACCA TACACATTGG TAAAACATTA 001360 001361 ACATTTTCAA ATCTCCAATC CAAGAATTTT CCCCAAATCC AGATTGTGCA GGTATTTTAG TGAATGATTC ACCCTACAGA 001440 001441 ATTACTTATT ACATTTTTCT TTAAACTTCA ATGGATTTGT AGCTGAATGA GGGATCAGGT AATCACCAGA CATCTTGGAA 001520 001521 GGGCACATGA TCCCTCAGGC CTTTTCTTGG AGAATGTTTA AAGAAACCTC TTCCTTCCCA TTAGGGAGGC CGACCATGAG 001600 001601 TCCCTTTGTG TTGACAGTGA AGGTGTCTGG GGCTACACCT CTTTCACATG CTCTGCCACC AGCAGTAAAA GTCAGAAGGC 001680 001681 CCTGGCACAG GGCACACCTG ATCTGTTCGG CATAAGTGCT GAGTCAAAAG CCTGCAATTA AGGCCAGTGG CTGGGAGGAG 001760 001761 GCCTGGTCCC AGCCTCTCCT TGATTTGCCT CACCCCACCC AAACACAGGT CATGTTCATC ATCTGCTAGC CAGCAAGGAA 001840 001841 GATGTGTGGG GTACAGGTTA CAGGGACTGA GCCCGGAGCC TGACTTTCTG GGCTCTACCA CTCGTTGTCT TCATTTCCAA 001920 001921 AGGCAAAGCA CTTGACCTCT CTGAGCCTCC ATTTCTCATC CATAAAATGG GGATGATGAT AAAAGTGACT GCTTCATAGG 002000 002001 ATTGTTGAGA GGATCAACTC AAGTAATATG TGAAAAGTGG CACATAATAA GTACTCTGTT TCATGTTTCT AATTAATTTT 002080 002081 ATTTTTTTTA GGTTTTTTAC TGTGGTAAAA TATATGTAAC ATAAAATTTA CTATTTTACT ATTTTTAAGT GTAAGTGGCG 002160 002161 TTGAATACAT TGTGGCATTG AATACATTCA CACTGTCATG CAACCATCAA CACCATCCAC CTCCAGCCTT CTTCGTCATC 002240 002241 CCAAACTGAA ACTCTACTCA TTAAACAATA ACTCCTCATT CCCGCTTCCC CTTAGCCTCT GGGAACCATT GTTCTTTGCC 002320 002321 CATTTTTAAA CGGAGGTTGT TGCTGGGTTG TGGGAGTTCT TTATTCTGGA TATTAATCCT TTACCAAATA GATAATTTGA 002400 002401 TTTTTTTTCC TATTCTGTGT GTTGCCTTGA CTATGTCCTT TCATGCACAA AATATTTTAA TTTTGATGAA GTCTAGTTTA 002480 002481 CCTATTTTTT CTTGTATTGC CTGTGTTTTG GTGTTAATTC CAAGAAATCA TTGCAAAATT CAATGTCATG AAATTTTGCC 002560 002561 CCTTTCTTCT AAGAGTTTTA TAGTTTTAGC TCTTATGTTT AGGTCATTGA TGACTTTGAG TTAATTTTTG TTTATGATGT 002640 002641 AAGGTAATGG TACAACTTCA TCCTTTTGCA TGTGGATATC CAGTTTTCCC AGCACTATTT ATTGAAAAAA AGACTGTCTT 002720 002721 TTCTCCATTG AGTGGTCTTG GCATCCTAGT TGAAAATCAT TTGACCCTAT ATATTAAGGT TTATTTCTGA TTTCATTGGT 002800 002801 CTATGAGTCT GTCTTTATGC CAGGACCACT CTGTTTTGAT TACGGTAGCT TTATAGCAAG TTTTGAAATC AGGAAGTGTG 002880 002881 AGACCTTCAA CTTTGTTCTT CATTTTTCTG GATGTTTTGG CTATTCTGGG CCCCTTGAGA TTTGAGAAAG AGTTCCCTCT 002960 002961 ACTGGCAGAT CTAAGACAGT CTGTTGACTC AGGTACCTGA TAATTTTTGA AGATGCATTT AAGAAGTTAA ACTATTGAGA 003040 003041 ATAAAAAAAT CTTAGCTAGG CTTTATTTTA TTTTTCTGAT CGGTTAGAGA CTCTTGGAGA CTTCTCTTTC TTCTCAATCA 003120 003121 ATTTGACTGA GGTATAATTA AAAAAAAATA AAACATACTG ATATGGCTTG GCTGTGTCCC CACCCAAAAT CTCATCTTGA 003200 003201 ATTATAATCC CCATAATCAT CATAATCCCC ACGTGTCAAG AGAGAGACCA GGTGGAAGTA ATTGAATCAT GGGGGCAGTT 003280 003281 TCCCCGATGT TGTTCTCGTG ATAGTGAGTG AGTTCTCACG AGATCTGATG GTTTATATGT TTACTAGTTC TTCCTGCGTT 003360 003361 AATTTTCCTT CCTGCCACCA TGTGAAGAAG GGGTCTTGCT TCCCCTTCGC TTTCTTACAC GATTGAAAGT TTCCTGAGGC 003440 003441 CTCCCCAGTC CTGCGGAACT GTGAGTCAAT TAAACCTCTT TCCTTTATAA ATTACCCAGT CTCGGACAGT TCTTTATAGC 003520 003521 AGTATGAAAA CAGACTAATG CATATACAGA CACATACACC TAAGTAACCA TCACTATCGC AATCAGGATA TCAAATATTT 003600 003601 CTATCAACCC AAAAAGTTCC TTTGTGATTT TTGTAGTCAG TCCCCACTCT TGATTCCCCA TGCCCCAGGC AACCACAGGT 003680 003681 CTGCTCCCCG TCATATAGAC GAGTGTTGTC TGTGTTCAGA TTTCAAATAC ATGGAATTGC ACAATATATG CTCCTATGTC 003760 003761 TAAATTTTTT TCACTTAGCA TAATGTTTTC GAAATTCATT CATGTTGTAT TTATCAGTAG TTTTTAGCAT TGTATCGCAC 003840 003841 TGTGGTATTT CATTGTATAT ATCATCATTT GTTTATCCAT TGACCAGTTG AACATTTGGG CTATTTCCAG TTTGGGGCTG 003920 003921 TTTTGAATAA AGGTGCCAAG TTC |
Predicted Small Protein
Name | NONHSAT119644_smProtein_2432:2623 |
Length | 64 |
Molecular weight | 7102.7162 |
Aromaticity | 0.0634920634921 |
Instability index | 67.3047619048 |
Isoelectric point | 9.24688720703 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0371200077083 |
Amino acid sequence | MSFHAQNILILMKSSLPIFSCIACVLVLIPRNHCKIQCHEILPLSSKSFIVLALMFRSLM TLS |
Secondary structure | LLHHHHHHHHHHHHLLLHHHHEEEEEEEELLLLLEEEHHHHLLLLLHHHHHHHHHHHHHH LLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL LLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo ooo |