NONHSAT119899

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT119899

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1558 nt

Genomic location

chr7-:30599604..30604233

Exon number

2

Exons

30599604..30601744,30603339..30604233

Genome context

Sequence
000001 CTTGTGATAG GGAGACAGGA GTCCTAGGAA GGAAATGGAA CTGGTGATAG GGAGACAAGA GTCCTAGGAA GGAAATGGAA 000080
000081 CTTGTGATAG GGAGACAAGA GTCCTAGGAA ATGGAAGGAG AGCACGTTTC ACTCTGTCCA GCAGAGGGCA GCAGCTACCC 000160
000161 ACAAATCAAC AGCTGAGCAA GGCCAGGGCT GTGTGGGAGC TATGCACAGG TTCTGCCTCC AGAAGCCTTC AGTGCCTGCC 000240
000241 TCTGAGCCAG AGGGTTCCAA GCAGAAGAGG TCCCGCCCCC GGAGAGGGAC CTCAGAGAGG TCCTCCAAGC CCCTCTCAGC 000320
000321 TCTTACTTAC GGCATCCCAG ATGCCCTATT CCTCTTCTGC AGAGAGAAGG TGGTTCAGCC ACTAAATGGT GCTGGGACCT 000400
000401 CGCAGTTTGG TGGGAAGGAG GAAGCTTACT CAAGCAAGGA ATATGAGACA GGCAAAAACC CACGCATAAG CCAAAAGCCC 000480
000481 CTCCAAAGCG AGGTGTTGTT CCAGGCTGAC AAGTGTCCAG CAGGGTGGAC TTCAGACTCC CTGTTAGGAA CTGAATTGTG 000560
000561 TCCCCCAAAA AGAGAAAGTC ACCCCAGGGT ATGACCTAAT TCAGGAAAGG TCATTGCAGA TGCATTTAAT TAAATGAAGA 000640
000641 TGAGCTCATG CTGGAGTAGG GTGGACTCTG AACCCAGTGG GACAAGCGTC CTTATTAAGA AGAGGGAAAT CTGGACACAC 000720
000721 ACAGAGCAGA GACCGCCGTG TGAAGATGGA GGCAGAGATC GGAGAGATGC TGCCACACGC CACAAATGCC TGGGGCTCCC 000800
000801 AGAAACTACA CGGAGCCTCC CCCAGCGGCT TCAGCAGGAG CATGGCTCGG CCAACACTTT GATCTTGGTC TTCCAGCCTC 000880
000881 CAGAACGGTG AGTCGTTTTC CTAAAATTCC CTTTTCCACT GGTGTGTGGT GCAAGATGAG GCACATTTTC CATGGATGGT 000960
000961 GAACAGAGGG AGGAGCCTTT TGATCACAAC CAGGTCACCC CACTTCTAAG CCACTGTGCC TCCAGCCCCA CAAGACTAAG 001040
001041 GAGAGAGAGC GCAGCGTGGT GGAGAGTGAG CTGTGCTGGG ACCATTGTTT CCGTAACCTC GTTTTCTGTG TCCAGCTGAC 001120
001121 ACACCTTCAA AGTGGCATCA GGTCCTAAAC TGTAGCTTGC AATGTGCCTG TTTCCAGAAA CCAAGGTGAA AGTGCTTTTA 001200
001201 GACAGTGTTC CCATGCAAGA GTCCCTTCCC AGCTTTTTTC TGGAAATGCA TGTTTCTCTG AACTCTGAGT CCCAAGAAAA 001280
001281 ATCACTTGAG ACACCAAGAA AATGGGGGAA GTGCTAAAAT TGTGTGGGAA TTCAAGCTTA ACAATAAACA TCAAGACATT 001360
001361 TTTGATAAAA ATGAATCCAC TGACATCGGG GAGGAGCAAG AGAACAGCAC GCTGACACTG GGTCAGAGGC TAAGACCGAC 001440
001441 ATTTCTGGGA ACCACTCCCG GAAGGGCACA GAGGAGACGC TTTCAGCCTC TCATCAGCCA GCCTGGCCTG TAGCTGCTGC 001520
001521 ACGTTATGAG TGTGTTCCTG GCATGACTGC TTCTAACA
[back to top]

Predicted Small Protein

Name NONHSAT119899_smProtein_785:961
Length 59
Molecular weight 6434.3545
Aromaticity 0.137931034483
Instability index 68.2879310345
Isoelectric point 10.2844848633
Runs 9
Runs residual 0.0014209928003
Runs probability 0.0291762350586
Amino acid sequence MPGAPRNYTEPPPAASAGAWLGQHFDLGLPASRTVSRFPKIPFSTGVWCKMRHIFHGW
Secondary structure LLLLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLEELLLLLLLLLLLLEELLLEEEELL
PRMN -
PiMo -