NONHSAT120001
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120001 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1394 nt |
Genomic location |
chr7-:32956057..32973122 |
Exon number |
5 |
Exons |
32956057..32957154,32957923..32957984,32960951..32961042,32969690..32969720,32973012..32973122 |
Genome context |
|
Sequence |
000001 tcagagcttc ccctgtgtct gctgtttctc aaaatgatcc ttagccaaaa aggtgtgctt tgaggtagca tattctggtc 000080
000081 tcctacagct atTCAACTGA GGACAGAGTA GTTATGAAAA ACCTCCTCCT GGGCTTATCA AGGTTGGCAT TGCAAATGGT 000160 000161 ATGGTCACCG AACAGGCTAC AAAGAATGCC CTTTCTTTAT CAAAGACAAC CAAAAGTTAC AACAGTTCAG AGTAGCACAT 000240 000241 GAGGATTTCA TGTATGACAT CATACGAGAC AATAAACAAC ATGAAAAGAA TGTAAGGATA CAGCAGTTAA AACAGTTACT 000320 000321 GGAGGATTCT ACCTCAGGTG AAGATAGGAG CAGCTCCAGT TCCTCTGAAG GTAAAGAGAA ACACaagaaa aagaagaaga 000400 000401 aagaaaagca taagaaaagg aagaaagaaa agaaaaagaa gaaaaaACGG AAGCACAAAT CTTCCAAGTC AAATGAGGGT 000480 000481 TCTGACTCAG AGTGACAAGG ATGTGACTTG TTCAACATTC TCTTCTCAAA CACTGACCAA GGAACAGAGG AAGATGCAGT 000560 000561 CAGAGAAAGT AGCAGGATAG AGACGCCGAG AGAGGAGTAT ATGTGGGTCA CAGCAGTGAG CTCCCACCCG CCTTGCAGTG 000640 000641 AAGATGTGAC CCCAGGAGAG GGAGTGTCTC CTTCCAGGTG CTAGCTCTGG ACAGCAGCTG ATTTTAGGCA GGAAAGTTTC 000720 000721 TTCATCGTTG TCCTCCCTGC TGGTCACATG AGTTTACGAT TCCTTAGAAG TGTCTCCCAC AGGGTGGCAG GACTGGGAGA 000800 000801 ATCTCTGAGG CGTGTCTTCC AGGCCCTCCC ACAGCTTGTG CCCTCCACAG TGTAGActtg aacacttggc ctcatgtgat 000880 000881 ccttccacct tggcctccca aagcattggg attacaggcg agagccactg GTTGGCTAAA ATATTTATAT TTACCTGACA 000960 000961 TGATTTGTTG ATTTGGGGGC TAGGGAGTTC TTAAAACAAC AATAAAAAAT CTTCTGTGGC TGCATTCTAC TTCACTTGCT 001040 001041 TTCTACTGCC AGAGTCCCAT GATTTTCACA GAGTGACTGA CTCAGAAAAG GTTTAGGAAT ATAGGGGGAT TTGTGTACTA 001120 001121 GGTCAGGTAT CCACATCCCA AAATCCATCC CTCCCTTTCT TCCTCTTCCT GTTGCCTGAC CACAGCCCAC CTGTGCTCTT 001200 001201 GTAGCTGAAA CTAGGCCACA GTAGAGGCAT CTCAGGAGGC CAGGGTGTGT CTGCAGCTGG AGGAGAGGAA GTCTATCCTT 001280 001281 TGCTGCGCCA AAGTGAAGCG GATCTTGCTC ATAGGCAAGT GTGTCCCTCT GTGGCTAGCA CTGGTCTCTT GCTGCTTTAG 001360 001361 GCACTCAGTC AGGGTCCCAG AAACTCACTC CCAT |
Predicted Small Protein
Name | NONHSAT120001_smProtein_113:241 |
Length | 43 |
Molecular weight | 4931.8483 |
Aromaticity | 0.0714285714286 |
Instability index | 75.5571428571 |
Isoelectric point | 12.012512207 |
Runs | 9 |
Runs residual | 0.038125376733 |
Runs probability | 0.020147598579 |
Amino acid sequence | MKNLLLGLSRLALQMVWSPNRLQRMPFLYQRQPKVTTVQSST |
Secondary structure | LHHHHHHHHHHHHHHHHLLLHHHHLLHHHHLLLLEEEEELLL |
PRMN | - |
PiMo | - |