NONHSAT120309
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120309 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1641 nt |
Genomic location |
chr7-:43678856..43681763 |
Exon number |
3 |
Exons |
43678856..43679280,43680172..43680668,43681045..43681763 |
Genome context |
|
Sequence |
000001 GATTTGTTCT TGAAGTGTGA CTAGGTGACT GCCTATTCAC CTGAGTTATG GAGCCATGTT CCAAATCTTG TGCCTTCCTT 000080
000081 CAGGTGTGTT TGGAAAGCAC AAATGTGTAC CTCAGTAGTT TCTTCTCTTG GTGGCAACTT GGAATGGGTG GGATACTCCC 000160 000161 CGCCCCAATT CCCTCCCCTG CCCCTGCCCC GGGAGGTATC TTTGGCCATC ACCGAGGACA CAGGAAGGCA CTCTGGGAGA 000240 000241 TGCCTGTCTC ATGATGGGCT TCCTTATTAA CTGTGCCTGT GTCTCCTTCG CGAGGCTCAT ACCTTCTTTG GTTTTCATGA 000320 000321 GAAACCAAAA ATATTGCATT CACTGTTTTT TTTCTCAATC GGAGTGTGAT CAACTGCTTA CGGGCTCTCA GGCTGACTCC 000400 000401 CTGAGCATGG GCATGGCAGC ACCTGGCAGC ATCCCTGTGG TACGAGCCCA GCCTGTGGTG CTGGGGATGA AGGAGAAACT 000480 000481 GAGAACTCTG TGTTGTCTTT CTCAGACAAG CCTTCATGTA TTGTATTTTC TTTAAAGCCT GTTCTTTAGG GTCCAGGTCA 000560 000561 AAATATGTAC CAATTTCCTG GCAATAGGTC CCTCTTTAAA ACAGTGAATT TTTTTTGGTa ttttattgtg aaaaatttca 000640 000641 aacgtacaaa aaagacaaaa gaatttatac tgtgagcacc tatagctggt acctggattc tacaattgga ttttgctctG 000720 000721 TTTCCAGGAC agtttagcct gttctagaat ttaacataaa tacttgtata ctcctcctgt gtaaagccct ttggcttggt 000800 000801 gtgtttttga tattcatcga tgttgctccg tgtatcagga gtttgctcct ttttaACAGT GGACTTTTGA GCGATCATTG 000880 000881 GAAGTACCCA GAGCATTGAC ATAGGAGTCC TCCTTGCCAA ATGGAAAGAC TGCCATTGAC CTTACCAGCC AACCAAAGAG 000960 000961 GGGCAGGACA TTTGGAAAAT CAAGTGGATT CTCCAGCTGG GCTGTTAGAA AAGAACTCAC TTCTGTGGAG AATCACTGGA 001040 001041 TTTTATAGGC TTAGCTCTAG AAAGCATCAT TTTGTCATCT TCTGAAATGA CAATAATTAT CCAATTACAT CTCTCCTTTC 001120 001121 TGTCATTTTA CACCCACAGT TGAAGATTCC TGTCTCTGGA TCCAAATCAG AGGGCCTTCT CTACGTCCAC TCATCCAGAG 001200 001201 GTGGCCCCTT TCAGAGGTGG CACCTTGACG AGGTCTTTTT AGAGCTCAAG GATGGTCAGC AGATTCCTGT GTTCAAGCTC 001280 001281 AGTGGGGAAA ACGGTGATGA AGTGAAAAAG GAGTAGAGAC GACCCAGAAG ACCCAGCTTG CTTCTAGTCC ATCCTTCCCT 001360 001361 CATCTCTACC ATATGGCCAC TGGGGTGGTG GCCCATCTCA GTGACAGACA CTCCTGCAAC CCAGTTTTCC AGCCACCAGT 001440 001441 GGGATGATGG TATGTGCCAG CACATGGTAA TTTTGGTGTA ATTCTAACTT GGGCACAACA AATGCTATTT GTCATTTTTA 001520 001521 AACTGAATCC GAAAGAAACT CCTATTATAA ATTTAAGATA ATGTAATGTA TTTGAAAGTG CTTTGTATAA AAAAGCACAT 001600 001601 GATAAAAGGA ATCAGAATTA ATAAAATGTT TGTTGATCTT T |
Predicted Small Protein
Name | NONHSAT120309_smProtein_47:253 |
Length | 69 |
Molecular weight | 7414.5709 |
Aromaticity | 0.117647058824 |
Instability index | 69.4235294118 |
Isoelectric point | 7.78253173828 |
Runs | 8 |
Runs residual | 0.022853736089 |
Runs probability | 0.0458399576046 |
Amino acid sequence | MEPCSKSCAFLQVCLESTNVYLSSFFSWWQLGMGGILPAPIPSPAPAPGGIFGHHRGHRK ALWEMPVS |
Secondary structure | LLLLLLLLLLHHHHHHLLLEEHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHH HHHHLLLL |
PRMN | - |
PiMo | - |